View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_6 (Length: 529)
Name: NF6866A_low_6
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_6 |
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| [»] scaffold1211 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 229 - 523
Target Start/End: Original strand, 26376522 - 26376816
Alignment:
| Q |
229 |
tttaatgctgtctccatgtctaattgtcttgtttcatatttacttttcttcacttgttgaggaccttgtttggcatgcactcaaagaaaaggttgaggca |
328 |
Q |
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| T |
26376522 |
tttaatgttgtctccatgtctaattgttttgtttcttatttacttttcttcacttgttgaggaccttgtttggcatgcactcaaagaaaaggttgaggca |
26376621 |
T |
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| Q |
329 |
agaatgatagaattgagcccgacgtccaatacatactatggtacttacagattcacttttattaacagcaaactatttattgtttcatttttattgttgg |
428 |
Q |
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| T |
26376622 |
agaatgatagaattgagcccgacgtccaatacatactatggtacttacagattcatttttattaacagcaaactatttattgtttcatttttattgctgg |
26376721 |
T |
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| Q |
429 |
tctttcattgttatgatggaaaacatgaaattcaccgctaatggtgattttctgttgttagatcatcaattgattttgtttgctcatccacctac |
523 |
Q |
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| T |
26376722 |
tctttcattgttatgatggaaaacatgaaattcaccgctaatggtgattttctgttgttagatcatcaattgattttgtttgctcatccacctac |
26376816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 26376105 - 26376326
Alignment:
| Q |
13 |
gttgaggtatctaggatccaacttttcctcccattctaatatagttttggaagtacctttgatgcaatagagtttgaaaaatgttgtgtgggattgtgtc |
112 |
Q |
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| T |
26376105 |
gttgaggtatctaggatccaacttttcctcccattctaatatagttttggaagtacctttgatgcaatagagtttgaaaaatgttgtgtgggattgtgtc |
26376204 |
T |
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| Q |
113 |
gtgtggattcataatcatgtaactgaaacgtaaatggatatgatggatgtacccatctgttgagagatgaattacttcaccctagaactctctccactct |
212 |
Q |
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| T |
26376205 |
gtgtggattcataatcgtgtaactgaaacataaatggatatgatggatgtacccatctgttgagagatgaattacttcaccctagtactctctccactct |
26376304 |
T |
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| Q |
213 |
ttattatgtttgttcgtttaat |
234 |
Q |
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| T |
26376305 |
ttattatgtttgttcgtttaat |
26376326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 229 - 516
Target Start/End: Original strand, 489 - 776
Alignment:
| Q |
229 |
tttaatgctgtctccatgtctaattgtcttgtttcatatttacttttcttcacttgttgaggaccttgtttggcatgcactcaaagaaaaggttgaggca |
328 |
Q |
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||||||||||||| ||||||||||||| |||| |||||| |||| | ||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
489 |
tttaatgctgtcttggtgtctaattgtctcatttcttatttatttttttccacttgttgaggatcttgtttggcatgcgctcaaagaaaaggttgaggca |
588 |
T |
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| Q |
329 |
agaatgatagaattgagcccgacgtccaatacatactatggtacttacagattcacttttattaacagcaaactatttattgtttcatttttattgttgg |
428 |
Q |
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| T |
589 |
aggatgatagaattgagcccgacgtccaatacatactatggtacttacagatttattttcatgaacagcaaattatatcatgtttcatttttattgttga |
688 |
T |
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| Q |
429 |
tctttcattgttatgatggaaaacatgaaattcaccgctaatggtgattttctgttgttagatcatcaattgattttgtttgctcatc |
516 |
Q |
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| T |
689 |
tctttctttgtaacgatggaaaacatcaaattcaaaactaatgataattttctgttgttagatcatcaactgattttgtttgctcatc |
776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 99 - 194
Alignment:
| Q |
16 |
gaggtatctaggatccaacttttcctcccattctaatatagttttggaagtacctttgatgcaatagagtttgaaaaatgttgtgtgggattgtgt |
111 |
Q |
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| T |
99 |
gaggtatctaggatccaactttttctcccgttctaatatagtttcgaaagtacctttgatgcaatagaatatgaaaaatgttgtgtggggttgtgt |
194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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