View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6866A_low_60 (Length: 369)
Name: NF6866A_low_60
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_60 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 34959277 - 34958927
Alignment:
| Q |
18 |
acaagagtgaaatgcaaatgaatcatatctttaaaataaaatgcatgcatcatatgccaaaaaggtcaagttttccagattttgaaaagcatttttggaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34959277 |
acaagagtgaaatgcaaatgaatcatatctttaaaataaaatgcatgcatcatatgccaaaaaggtcaagttttccagattttgaaaagcattttttgaa |
34959178 |
T |
|
| Q |
118 |
gccaatttctttgaactttgagagatgattaatatagtttcaatgtgcacatgaggctggatcttagacttgtttcaccgttacaacaaatatgtactat |
217 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34959177 |
gccaatttctaagaactttgagagatgattaatatagtttcaatgtgcacatgaggctggatcttagacttgtttcaccgttacaacaaatatgtactat |
34959078 |
T |
|
| Q |
218 |
t----gttgatgaggcgcacttgttaatatggcatgaacttttt-tatacaatcctgaatcaatgactttaaccatatgaaatattggaatgtgagttgc |
312 |
Q |
| |
|
| |||||||||||||||||||||||||| | || ||||||| | |||||||||||||||||||| ||||||||||||||| ||| ||||| |||||| |
|
|
| T |
34959077 |
tgtacgttgatgaggcgcacttgttaatatgtcctgcactttttgtgtacaatcctgaatcaatgac-ttaaccatatgaaattttgaaatgtaagttgc |
34958979 |
T |
|
| Q |
313 |
tttcggaatatggtgatactatgaaacacaaactcatacacgaacaccaaac |
364 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34958978 |
ttttggaatatggtaatactatgaaacacaaactcatacacgaacacgaaac |
34958927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 3921320 - 3921657
Alignment:
| Q |
18 |
acaagagtgaaatgcaaatgaatcatatctttaaaataaaatgcatgcatcatatgccaaaaaggtcaagttttccagattttgaaaagcatttttggaa |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
3921320 |
acaagagtgaaatgcagatgaatcatatctttaaaataaaatgcatgcatcatatgccaaaaaggtcaagctttccagattttgaaaagcattttctgaa |
3921419 |
T |
|
| Q |
118 |
gccaatttctttgaactttgagagatgattaatatagtttcaatgtgcacatgaggctggatcttagacttgtttcaccgttacaacaaatatgtactat |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3921420 |
accaatttctttgaactgtgagagatgattaatataggttcaatgtgcacatgaggctggatcttagacttgtttcacagttacaacaaatatgtactat |
3921519 |
T |
|
| Q |
218 |
tgttgatgaggcgcacttgttaatatggcatgaacttttt-tatacaatcctgaatcaatgactttaaccatatgaaatattggaatgtgagttgctttc |
316 |
Q |
| |
|
|||| ||||||||||||| | | ||||||| | ||||||||| |||||||||||||||||||||||||| | |||||||| || ||||| |
|
|
| T |
3921520 |
tgtt----------acttgttaatatgtcctacactttttgtgtacaatcctcaatcaatgactttaaccatatgaaatttccgaatgtgaattactttc |
3921609 |
T |
|
| Q |
317 |
ggaatatggtgatactatgaaacacaaactcatacacgaacaccaaac |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3921610 |
ggaatatggtgatactatgaaacacaaactcatacacgaacacgaaac |
3921657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University