View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_63 (Length: 365)

Name: NF6866A_low_63
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_63
NF6866A_low_63
[»] chr1 (19 HSPs)
chr1 (8-154)||(8638235-8638381)
chr1 (232-272)||(43755710-43755750)
chr1 (232-271)||(49699784-49699823)
chr1 (232-276)||(39669801-39669845)
chr1 (233-272)||(23554750-23554789)
chr1 (233-272)||(29706736-29706775)
chr1 (243-276)||(21039646-21039679)
chr1 (238-271)||(31847223-31847256)
chr1 (233-278)||(32873334-32873379)
chr1 (231-271)||(6841789-6841829)
chr1 (233-277)||(26101388-26101432)
chr1 (232-272)||(30439249-30439289)
chr1 (219-271)||(31433502-31433554)
chr1 (219-271)||(40139126-40139178)
chr1 (232-272)||(46910403-46910443)
chr1 (232-272)||(48678985-48679025)
chr1 (232-272)||(49596234-49596274)
chr1 (232-272)||(50062006-50062046)
chr1 (237-277)||(52283737-52283777)
[»] chr5 (14 HSPs)
chr5 (34-144)||(6758393-6758501)
chr5 (287-346)||(6758565-6758624)
chr5 (233-275)||(6940183-6940225)
chr5 (219-272)||(4434481-4434534)
chr5 (233-272)||(7144576-7144615)
chr5 (233-271)||(30420626-30420664)
chr5 (236-272)||(372420-372456)
chr5 (241-273)||(8897380-8897412)
chr5 (232-272)||(9714168-9714208)
chr5 (232-276)||(27340864-27340908)
chr5 (219-271)||(30334774-30334826)
chr5 (238-274)||(35814450-35814486)
chr5 (232-272)||(38500942-38500982)
chr5 (233-273)||(38704230-38704270)
[»] chr8 (19 HSPs)
chr8 (233-272)||(33863281-33863320)
chr8 (233-271)||(20852919-20852957)
chr8 (232-272)||(3950109-3950149)
chr8 (233-272)||(6445174-6445213)
chr8 (233-272)||(45405530-45405569)
chr8 (233-275)||(4312544-4312586)
chr8 (232-274)||(8074756-8074798)
chr8 (233-271)||(29913564-29913602)
chr8 (233-278)||(999291-999336)
chr8 (245-278)||(37784419-37784452)
chr8 (232-273)||(37873137-37873178)
chr8 (222-275)||(40074853-40074906)
chr8 (234-271)||(40517269-40517306)
chr8 (232-272)||(2768146-2768186)
chr8 (241-273)||(6161946-6161978)
chr8 (232-268)||(20052839-20052875)
chr8 (235-271)||(22960452-22960488)
chr8 (232-272)||(27630896-27630936)
chr8 (232-272)||(39021475-39021515)
[»] scaffold0154 (1 HSPs)
scaffold0154 (232-274)||(4312-4354)
[»] chr4 (22 HSPs)
chr4 (232-273)||(12074183-12074224)
chr4 (232-272)||(36444427-36444467)
chr4 (219-274)||(30973594-30973649)
chr4 (232-271)||(35332706-35332745)
chr4 (233-272)||(35661630-35661669)
chr4 (233-276)||(53463103-53463146)
chr4 (233-276)||(54801520-54801563)
chr4 (233-271)||(18880785-18880823)
chr4 (233-271)||(40258205-40258243)
chr4 (232-270)||(45548816-45548854)
chr4 (233-275)||(50506389-50506431)
chr4 (234-271)||(14603458-14603495)
chr4 (232-272)||(11012140-11012180)
chr4 (245-273)||(15522352-15522380)
chr4 (241-273)||(24088605-24088637)
chr4 (219-275)||(26718376-26718432)
chr4 (219-275)||(26731004-26731060)
chr4 (234-270)||(32464638-32464674)
chr4 (232-272)||(36058404-36058444)
chr4 (219-271)||(36413334-36413386)
chr4 (232-272)||(43168746-43168786)
chr4 (232-272)||(44170651-44170691)
[»] chr7 (14 HSPs)
chr7 (208-272)||(2323303-2323367)
chr7 (232-276)||(46651667-46651711)
chr7 (233-272)||(5068656-5068695)
chr7 (241-276)||(22692079-22692114)
chr7 (245-275)||(42584798-42584828)
chr7 (191-272)||(26041320-26041401)
chr7 (232-273)||(44894505-44894546)
chr7 (232-272)||(7990078-7990118)
chr7 (232-272)||(16567315-16567355)
chr7 (232-272)||(16598307-16598347)
chr7 (232-276)||(23761054-23761098)
chr7 (233-273)||(42467202-42467242)
chr7 (233-273)||(43079665-43079705)
chr7 (233-273)||(46880900-46880940)
[»] chr6 (11 HSPs)
chr6 (232-272)||(11635616-11635656)
chr6 (234-274)||(28670523-28670563)
chr6 (284-335)||(2253717-2253768)
chr6 (233-272)||(16368080-16368119)
chr6 (232-270)||(736852-736890)
chr6 (234-272)||(2822221-2822259)
chr6 (238-272)||(22492065-22492099)
chr6 (232-269)||(29643449-29643486)
chr6 (232-272)||(11785354-11785394)
chr6 (235-271)||(21857602-21857638)
chr6 (232-268)||(29172993-29173029)
[»] chr3 (18 HSPs)
chr3 (232-272)||(47849671-47849711)
chr3 (241-277)||(50652382-50652418)
chr3 (233-272)||(349446-349485)
chr3 (233-268)||(22836228-22836263)
chr3 (233-276)||(24095439-24095482)
chr3 (232-271)||(28300286-28300325)
chr3 (233-272)||(35755983-35756022)
chr3 (233-271)||(21239111-21239149)
chr3 (233-271)||(51230641-51230679)
chr3 (219-272)||(43169761-43169814)
chr3 (219-272)||(46952948-46953001)
chr3 (222-275)||(47392450-47392503)
chr3 (232-273)||(53133984-53134025)
chr3 (219-271)||(23868986-23869038)
chr3 (233-273)||(43409395-43409435)
chr3 (219-275)||(47683797-47683853)
chr3 (220-276)||(50876371-50876427)
chr3 (232-272)||(52727480-52727520)
[»] chr2 (10 HSPs)
chr2 (232-272)||(34442112-34442152)
chr2 (233-268)||(8805233-8805268)
chr2 (213-276)||(37966362-37966425)
chr2 (233-275)||(4319765-4319807)
chr2 (233-271)||(12784432-12784470)
chr2 (233-273)||(10288148-10288188)
chr2 (232-272)||(10749711-10749751)
chr2 (233-273)||(13553145-13553185)
chr2 (232-272)||(41353529-41353569)
chr2 (232-272)||(43994045-43994085)
[»] scaffold0005 (1 HSPs)
scaffold0005 (234-271)||(213883-213920)
[»] scaffold0204 (1 HSPs)
scaffold0204 (232-272)||(27338-27378)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 8638235 - 8638381
Alignment:
Q  8 tgattgtaccaagattggatcattcgaagaaatggtgtttcaattcaagaaaattcgcaccgataataaattcatatgctataattcaaattcatttgaa 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| |||    
T  8638235 tgattgtaccaagattgaatcattcgaagaaatggtgtttcaattcaagaaaattcacactgataataaattcatatgctgtaattcaaattcattcgaa 8638334  T
Q  108 gaagccaaaatttcttcaagaaaagactttttagtgatgacaacttt 154  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  8638335 gaagccaagatttcttcaagaaaagactttttagtgatgacaacttt 8638381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 43755710 - 43755750
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  43755710 aaaaaattatcataaaatggttgtacaaatatcatttctct 43755750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 49699784 - 49699823
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  49699784 aaaaaattatcataaaatggttgtacaaatatcatttctc 49699823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 39669845 - 39669801
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctctaaaa 276  Q
    |||||||| ||| |||||||||||||| |||||||||||||||||    
T  39669845 aaaaaattgtcacaaaatggttgtacaaatatcatttctctaaaa 39669801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 23554789 - 23554750
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  23554789 aaaaattatcaaaaaatggttgtacaaatatcatttctct 23554750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 29706736 - 29706775
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  29706736 aaaagttatcataaaatggttgtacaaatatcatttctct 29706775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 276
Target Start/End: Original strand, 21039646 - 21039679
Alignment:
Q  243 ataaaatggttgtacatatatcatttctctaaaa 276  Q
    ||||||||||||||||||||||||||||| ||||    
T  21039646 ataaaatggttgtacatatatcatttctcaaaaa 21039679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 31847223 - 31847256
Alignment:
Q  238 ttatcataaaatggttgtacatatatcatttctc 271  Q
    ||||||||||||||||||||| ||||||||||||    
T  31847223 ttatcataaaatggttgtacaaatatcatttctc 31847256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 32873379 - 32873334
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctctaaaata 278  Q
    |||| |||||||||||||| |||||| |||||||||||||| ||||    
T  32873379 aaaagttatcataaaatggatgtacaaatatcatttctctataata 32873334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 6841829 - 6841789
Alignment:
Q  231 gaaaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    |||||||||||||||||||| ||||||| |||| |||||||    
T  6841829 gaaaaaattatcataaaatgtttgtacaaatatgatttctc 6841789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 26101432 - 26101388
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctctaaaat 277  Q
    ||||||||||| |||||  ||||||| ||||||||||||||||||    
T  26101432 aaaaattatcacaaaataattgtacaaatatcatttctctaaaat 26101388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 30439289 - 30439249
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||| ||||||| |||||||||| |||||||||||||    
T  30439289 aaaaaattgtcataaattggttgtacaaatatcatttctct 30439249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 31433554 - 31433502
Alignment:
Q  219 gtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    ||||||||||  ||||||||| || ||||||||||||||| |||| |||||||    
T  31433554 gtgagtatgagagaaaaaattgtcgtaaaatggttgtacaaatataatttctc 31433502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 40139178 - 40139126
Alignment:
Q  219 gtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    ||||||||||  || ||| || |||||||||||||||||| ||||||||||||    
T  40139178 gtgagtatgagagagaaagttgtcataaaatggttgtacaaatatcatttctc 40139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 46910443 - 46910403
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||| ||| ||||| ||||||||||||||||||||||    
T  46910443 aaaaaattgtcacaaaatagttgtacatatatcatttctct 46910403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 48678985 - 48679025
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||| |||||||||| ||||||| |||||||||||||    
T  48678985 aaaaaattgtcataaaatgattgtacaaatatcatttctct 48679025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 49596274 - 49596234
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||| | |||||||||||||||| |||||||||||||    
T  49596274 aaaaaattgtaataaaatggttgtacaaatatcatttctct 49596234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 50062006 - 50062046
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||||||||||| ||| |||||| |||||||||||||    
T  50062006 aaaaaattatcataaagtggatgtacaaatatcatttctct 50062046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 52283737 - 52283777
Alignment:
Q  237 attatcataaaatggttgtacatatatcatttctctaaaat 277  Q
    ||||||| |||||||||||| | ||||||||||||||||||    
T  52283737 attatcaaaaaatggttgtagaaatatcatttctctaaaat 52283777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 6758393 - 6758501
Alignment:
Q  34 aagaaatggtgtttcaattcaagaaaattcgcaccgataataaattcatatgctataattcaaattcatttgaagaagccaaaatttcttcaagaaaaga 133  Q
    |||||| || |||||||||||||||||||| |||  ||| |||||||||||  | | || |||||||||| ||||||||||| ||||||||| |||||||    
T  6758393 aagaaagggcgtttcaattcaagaaaattcacact-atattaaattcatatattgtcatccaaattcatt-gaagaagccaagatttcttcaggaaaaga 6758490  T
Q  134 ctttttagtga 144  Q
    ||||| |||||    
T  6758491 cttttaagtga 6758501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 6758565 - 6758624
Alignment:
Q  287 gattaaaatcacttgcagataacgacgataaactaccctatttatgtacatcacaatgtt 346  Q
    |||||||||||||||||| ||| || ||||||||||| |||||||||||  |||||||||    
T  6758565 gattaaaatcacttgcagctaatgatgataaactaccttatttatgtacggcacaatgtt 6758624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 6940183 - 6940225
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctctaaa 275  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  6940183 aaaaattattataaaatggttgtacaaatatcatttctctaaa 6940225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 4434534 - 4434481
Alignment:
Q  219 gtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||||||||  ||||||||| ||| |||||||||||||| |||||||||||||    
T  4434534 gtgagtatgagagaaaaaattgtcaaaaaatggttgtacaaatatcatttctct 4434481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 7144615 - 7144576
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  7144615 aaaagttatcataaaatggttgtacaaatatcatttctct 7144576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 30420664 - 30420626
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  30420664 aaaaattatcataaaatggatgtacaaatatcatttctc 30420626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 372420 - 372456
Alignment:
Q  236 aattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||| |||||||||||||||| |||||||||||||    
T  372420 aattattataaaatggttgtacaaatatcatttctct 372456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 8897412 - 8897380
Alignment:
Q  241 tcataaaatggttgtacatatatcatttctcta 273  Q
    |||||||||||||||||| ||||||||||||||    
T  8897412 tcataaaatggttgtacaaatatcatttctcta 8897380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 9714168 - 9714208
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||| || ||||||| ||||||||||||||||||||||||    
T  9714168 aaaaagttgtcataaagtggttgtacatatatcatttctct 9714208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 27340908 - 27340864
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctctaaaa 276  Q
    |||||||||| ||||| || ||||||| |||||||||||||||||    
T  27340908 aaaaaattataataaagtgattgtacaaatatcatttctctaaaa 27340864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 30334774 - 30334826
Alignment:
Q  219 gtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    ||||||||||  || |||||| ||||||| |||||||||| ||||||||||||    
T  30334774 gtgagtatgaaagagaaaattgtcataaagtggttgtacaaatatcatttctc 30334826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 35814486 - 35814450
Alignment:
Q  238 ttatcataaaatggttgtacatatatcatttctctaa 274  Q
    |||||| |||||||||||||| |||||||||||||||    
T  35814486 ttatcacaaaatggttgtacaaatatcatttctctaa 35814450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 38500982 - 38500942
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||| ||| |||||||||||||| |||||||||||||    
T  38500982 aaaaaattgtcacaaaatggttgtacaaatatcatttctct 38500942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 38704230 - 38704270
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctcta 273  Q
    ||||||||||||||||||| ||| || ||||||||||||||    
T  38704230 aaaaattatcataaaatggatgttcaaatatcatttctcta 38704270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 33863281 - 33863320
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  33863281 aaaaattatcagaaaatggttgtacatatatcatttctct 33863320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 20852957 - 20852919
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  20852957 aaaaattatcataaaatggttgtacaaatatcatttctc 20852919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 3950149 - 3950109
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||||| |||||||||||||||| |||||||||||||    
T  3950149 aaaaaattataataaaatggttgtacaaatatcatttctct 3950109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 6445213 - 6445174
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  6445213 aaaaattatcataaaatggttgtacaaatatcatctctct 6445174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 45405569 - 45405530
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  45405569 aaaaattattaaaaaatggttgtacatatatcatttctct 45405530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 4312586 - 4312544
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctctaaa 275  Q
    ||||||||||||||||| ||||| || ||||||||||||||||    
T  4312586 aaaaattatcataaaatagttgttcaaatatcatttctctaaa 4312544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 8074756 - 8074798
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctctaa 274  Q
    |||||||| ||||||| |||||||||| |||||||||||||||    
T  8074756 aaaaaattgtcataaagtggttgtacaaatatcatttctctaa 8074798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 29913602 - 29913564
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  29913602 aaaaattatcataaaatagttgtacaaatatcatttctc 29913564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 999291 - 999336
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctctaaaata 278  Q
    ||||||||| | |||||||||||||| ||||||||||||| |||||    
T  999291 aaaaattataagaaaatggttgtacaaatatcatttctcttaaata 999336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 37784419 - 37784452
Alignment:
Q  245 aaaatggttgtacatatatcatttctctaaaata 278  Q
    |||||||||||||| |||||||||||||||||||    
T  37784419 aaaatggttgtacaaatatcatttctctaaaata 37784452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 37873137 - 37873178
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctcta 273  Q
    ||||| |||||||||||||||| |||| ||||||||||||||    
T  37873137 aaaaagttatcataaaatggttttacaaatatcatttctcta 37873178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 40074906 - 40074853
Alignment:
Q  222 agtatgatggaaaaaattatcataaaatggttgtacatatatcatttctctaaa 275  Q
    |||||||  ||||||||||||||||||| ||||| || ||||||||||| ||||    
T  40074906 agtatgagagaaaaaattatcataaaatagttgttcaaatatcatttctttaaa 40074853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 40517306 - 40517269
Alignment:
Q  234 aaaattatcataaaatggttgtacatatatcatttctc 271  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  40517306 aaaattatcataaaatggttgtacaaatataatttctc 40517269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 2768186 - 2768146
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||| ||||||||||| ||||||||| |||||||||||||    
T  2768186 aaaaagttatcataaaacggttgtacaaatatcatttctct 2768146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 6161978 - 6161946
Alignment:
Q  241 tcataaaatggttgtacatatatcatttctcta 273  Q
    |||||||||||||||||| ||||||||||||||    
T  6161978 tcataaaatggttgtacaaatatcatttctcta 6161946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 20052875 - 20052839
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcattt 268  Q
    |||||||||| |||||||||||||||| |||||||||    
T  20052875 aaaaaattataataaaatggttgtacaaatatcattt 20052839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 22960452 - 22960488
Alignment:
Q  235 aaattatcataaaatggttgtacatatatcatttctc 271  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  22960452 aaattatcctaaaatggttgtacaaatatcatttctc 22960488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 27630936 - 27630896
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||| ||||||||||| |||||| |||||||||||||    
T  27630936 aaaaaattgtcataaaatggatgtacaaatatcatttctct 27630896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 39021475 - 39021515
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||| |||||| |||||||||||||| |||||||||||||    
T  39021475 aaaaagttatcacaaaatggttgtacaaatatcatttctct 39021515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 4354 - 4312
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctctaa 274  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  4354 aaaaagttatcataaaatggttgtacaaatatcatttctctaa 4312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 12074183 - 12074224
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctcta 273  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  12074183 aaaaaattgtcataaaatggttgtacaaatatcatttctcta 12074224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 36444427 - 36444467
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  36444427 aaaaagttatcataaaatggttgtacaaatatcatttctct 36444467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 30973649 - 30973594
Alignment:
Q  219 gtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctctaa 274  Q
    ||||||||||  |||||| || ||||||| |||||||||| |||||||||||||||    
T  30973649 gtgagtatgaaagaaaaagttgtcataaagtggttgtacaaatatcatttctctaa 30973594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 35332745 - 35332706
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  35332745 aaaaaattatcataaagtggttgtacaaatatcatttctc 35332706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 35661630 - 35661669
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  35661630 aaaaattgtcataaaatggttgtacaaatatcatttctct 35661669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 53463103 - 53463146
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctctaaaa 276  Q
    ||||||| | |||||||||||||||| |||||||||||||||||    
T  53463103 aaaaattgttataaaatggttgtacaaatatcatttctctaaaa 53463146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 54801520 - 54801563
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctctaaaa 276  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||    
T  54801520 aaaaattataataaaatgattgtacaaatatcatttctctaaaa 54801563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 18880823 - 18880785
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  18880823 aaaagttatcataaaattgttgtacatatatcatttctc 18880785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 40258243 - 40258205
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  40258243 aaaaattatcataaaatggttgtataaatatcatttctc 40258205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 45548816 - 45548854
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttct 270  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  45548816 aaaaaattatcacaaaatggttgtacaaatatcatttct 45548854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 50506431 - 50506389
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctctaaa 275  Q
    ||||||||||| ||||||||||| || ||||||||||||||||    
T  50506431 aaaaattatcaaaaaatggttgttcaaatatcatttctctaaa 50506389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 14603495 - 14603458
Alignment:
Q  234 aaaattatcataaaatggttgtacatatatcatttctc 271  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  14603495 aaaattatcataaattggttgtacatgtatcatttctc 14603458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 11012180 - 11012140
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||| || |||||||||||||||||| |||||||||||||    
T  11012180 aaaaagttgtcataaaatggttgtacaaatatcatttctct 11012140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 273
Target Start/End: Complemental strand, 15522380 - 15522352
Alignment:
Q  245 aaaatggttgtacatatatcatttctcta 273  Q
    |||||||||||||||||||||||||||||    
T  15522380 aaaatggttgtacatatatcatttctcta 15522352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 24088605 - 24088637
Alignment:
Q  241 tcataaaatggttgtacatatatcatttctcta 273  Q
    |||||||||||||||||| ||||||||||||||    
T  24088605 tcataaaatggttgtacaaatatcatttctcta 24088637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 26718432 - 26718376
Alignment:
Q  219 gtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctctaaa 275  Q
    ||||||||||  || |||||| ||||||||||| ||| || ||||||||||||||||    
T  26718432 gtgagtatgagagagaaaattgtcataaaatggatgttcaaatatcatttctctaaa 26718376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 26731060 - 26731004
Alignment:
Q  219 gtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctctaaa 275  Q
    ||||||||||  || |||||| ||||||||||| ||| || ||||||||||||||||    
T  26731060 gtgagtatgagagagaaaattgtcataaaatggatgttcaaatatcatttctctaaa 26731004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 32464638 - 32464674
Alignment:
Q  234 aaaattatcataaaatggttgtacatatatcatttct 270  Q
    |||||||||||||||| |||||||| |||||||||||    
T  32464638 aaaattatcataaaatagttgtacaaatatcatttct 32464674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 36058444 - 36058404
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||||||||||||| |||| ||| |||||||||||||    
T  36058444 aaaaaattatcataaaatagttgaacaaatatcatttctct 36058404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 36413334 - 36413386
Alignment:
Q  219 gtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    ||||||||||  || |||||||||||||| |||||||| | ||||||||||||    
T  36413334 gtgagtatgagagagaaaattatcataaagtggttgtataaatatcatttctc 36413386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 43168746 - 43168786
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||| ||| |||||||||||||| |||||||||||||    
T  43168746 aaaaaattgtcacaaaatggttgtacaaatatcatttctct 43168786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 44170651 - 44170691
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||||| | |||||||||||||| |||||||||||||    
T  44170651 aaaaaattataacaaaatggttgtacaaatatcatttctct 44170691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 2323367 - 2323303
Alignment:
Q  208 aagtacatcacgtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||||| ||||||||||  || ||| || ||||||||| |||||||| |||||||||||||    
T  2323367 aagtacatcatgtgagtatgagagagaaagttgtcataaaattgttgtacaaatatcatttctct 2323303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 46651711 - 46651667
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctctaaaa 276  Q
    |||||||| ||||||| | ||||||||||||||||||||||||||    
T  46651711 aaaaaattgtcataaagtagttgtacatatatcatttctctaaaa 46651667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 5068656 - 5068695
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  5068656 aaaagttatcataaaatggttgtacaaatatcatttctct 5068695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 276
Target Start/End: Complemental strand, 22692114 - 22692079
Alignment:
Q  241 tcataaaatggttgtacatatatcatttctctaaaa 276  Q
    |||||||||||||||||| |||||||||||||||||    
T  22692114 tcataaaatggttgtacaaatatcatttctctaaaa 22692079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 275
Target Start/End: Complemental strand, 42584828 - 42584798
Alignment:
Q  245 aaaatggttgtacatatatcatttctctaaa 275  Q
    |||||||||||||||||||||||||||||||    
T  42584828 aaaatggttgtacatatatcatttctctaaa 42584798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 26041401 - 26041320
Alignment:
Q  191 aaaggaagagagtatacaagtacatcacgtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||||||||||   | ||| |||||| ||||||||||  || ||| || |||||||||||||||||  |||||||||||||    
T  26041401 aaaggaagagagagaataagaacatcatgtgagtatgaaagagaaagttgtcataaaatggttgtacgaatatcatttctct 26041320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 44894505 - 44894546
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctcta 273  Q
    ||||| |||||||||||||| |||||| ||||||||||||||    
T  44894505 aaaaagttatcataaaatggatgtacaaatatcatttctcta 44894546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 7990118 - 7990078
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||||||||||||| | |||||| |||||||||||||    
T  7990118 aaaaaattatcataaaatagatgtacaaatatcatttctct 7990078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 16567355 - 16567315
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||| |||| |||||||||||||||| |||||||||||||    
T  16567355 aaaaagttataataaaatggttgtacaaatatcatttctct 16567315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 16598307 - 16598347
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||| |||| |||||||||||||||| |||||||||||||    
T  16598307 aaaaagttataataaaatggttgtacaaatatcatttctct 16598347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 23761098 - 23761054
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctctaaaa 276  Q
    ||||| |||||| ||||| | ||||||||||||||||||||||||    
T  23761098 aaaaagttatcaaaaaatcgatgtacatatatcatttctctaaaa 23761054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 42467242 - 42467202
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctcta 273  Q
    ||||||||| | |||||||||||||| ||||||||||||||    
T  42467242 aaaaattattaaaaaatggttgtacaaatatcatttctcta 42467202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 43079665 - 43079705
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctcta 273  Q
    ||||||||||| ||| |||||||||| ||||||||||||||    
T  43079665 aaaaattatcacaaagtggttgtacaaatatcatttctcta 43079705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 46880940 - 46880900
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctcta 273  Q
    ||||||||||| ||||||||||| || ||||||||||||||    
T  46880940 aaaaattatcaaaaaatggttgttcaaatatcatttctcta 46880900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 11635656 - 11635616
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  11635656 aaaaaattatcataaaattgttgtacaaatatcatttctct 11635616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 28670563 - 28670523
Alignment:
Q  234 aaaattatcataaaatggttgtacatatatcatttctctaa 274  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  28670563 aaaaatatcataaaatggttgtacaaatatcatttctctaa 28670523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 2253717 - 2253768
Alignment:
Q  284 gaggattaaaatcacttgcagataacgacgataaactaccctatttatgtac 335  Q
    ||||||||||||||| || |||||| || |||||||||| ||||||||||||    
T  2253717 gaggattaaaatcacatgaagataatgatgataaactactctatttatgtac 2253768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 16368080 - 16368119
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  16368080 aaaaattattataaaatggttgtacaaatatcatttctct 16368119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 736852 - 736890
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttct 270  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  736852 aaaaaattatcataaaatagttgtacaaatatcatttct 736890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 2822259 - 2822221
Alignment:
Q  234 aaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  2822259 aaaattattataaaatggttgtacaaatatcatttctct 2822221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 22492065 - 22492099
Alignment:
Q  238 ttatcataaaatggttgtacatatatcatttctct 272  Q
    |||||| ||||||||||||||||||||||||||||    
T  22492065 ttatcacaaaatggttgtacatatatcatttctct 22492099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 29643449 - 29643486
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttc 269  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  29643449 aaaaaattgtcagaaaatggttgtacatatatcatttc 29643486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 11785394 - 11785354
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||| ||| |||||||||||||| |||||||||||||    
T  11785394 aaaaaattgtcacaaaatggttgtacaaatatcatttctct 11785354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 21857602 - 21857638
Alignment:
Q  235 aaattatcataaaatggttgtacatatatcatttctc 271  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  21857602 aaattgtcataaaatggttgtacaaatatcatttctc 21857638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 29173029 - 29172993
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcattt 268  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  29173029 aaaaagttatcataaaatggttgtacaaatatcattt 29172993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 47849711 - 47849671
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||||||| |||||||||||||| |||||||||||||    
T  47849711 aaaaaattatcacaaaatggttgtacaaatatcatttctct 47849671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 50652418 - 50652382
Alignment:
Q  241 tcataaaatggttgtacatatatcatttctctaaaat 277  Q
    |||||||||||||||||| ||||||||||||||||||    
T  50652418 tcataaaatggttgtacaaatatcatttctctaaaat 50652382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 349446 - 349485
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  349446 aaaaattattataaaatggttgtacaaatatcatttctct 349485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 22836228 - 22836263
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcattt 268  Q
    |||||||||||||||||||||||||| |||||||||    
T  22836228 aaaaattatcataaaatggttgtacaaatatcattt 22836263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 24095439 - 24095482
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctctaaaa 276  Q
    ||||||||||||||||||| ||| || |||||||||||||||||    
T  24095439 aaaaattatcataaaatggatgttcaaatatcatttctctaaaa 24095482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 28300325 - 28300286
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    |||||||||| |||||||||||||||| ||||||||||||    
T  28300325 aaaaaattataataaaatggttgtacaaatatcatttctc 28300286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 35756022 - 35755983
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  35756022 aaaaattatcataaaatggttgttcaaatatcatttctct 35755983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 21239111 - 21239149
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  21239111 aaaaattatcataaaatagttgtacaaatatcatttctc 21239149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 51230641 - 51230679
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  51230641 aaaaattatcataaaatggttgtacaaatatcttttctc 51230679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 43169761 - 43169814
Alignment:
Q  219 gtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||||||||  |||||| || ||| |||||||||||||| |||||||||||||    
T  43169761 gtgagtatgagagaaaaagttgtcacaaaatggttgtacaaatatcatttctct 43169814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 46953001 - 46952948
Alignment:
Q  219 gtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    ||||||||||  || ||| |||||| |||||||||||||| |||||||||||||    
T  46953001 gtgagtatgagagagaaagttatcaaaaaatggttgtacaaatatcatttctct 46952948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 47392450 - 47392503
Alignment:
Q  222 agtatgatggaaaaaattatcataaaatggttgtacatatatcatttctctaaa 275  Q
    |||||||  ||||||||||||||||||| ||||| || ||||||||||| ||||    
T  47392450 agtatgagagaaaaaattatcataaaatagttgttcaaatatcatttctttaaa 47392503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 53133984 - 53134025
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctcta 273  Q
    |||||||||| ||||||||||| |||| ||||||||||||||    
T  53133984 aaaaaattattataaaatggttttacaaatatcatttctcta 53134025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 23868986 - 23869038
Alignment:
Q  219 gtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    ||||||||||  || |||||| | |||||||||||||||| ||||||||||||    
T  23868986 gtgagtatgaaagagaaaattgttataaaatggttgtacaaatatcatttctc 23869038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 43409395 - 43409435
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctcta 273  Q
    ||||||||||| ||| |||||||||| ||||||||||||||    
T  43409395 aaaaattatcacaaagtggttgtacaaatatcatttctcta 43409435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 47683853 - 47683797
Alignment:
Q  219 gtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctctaaa 275  Q
    ||||||||||  || ||| || ||| |||||||||||||| ||||||||||||||||    
T  47683853 gtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctctaaa 47683797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 50876371 - 50876427
Alignment:
Q  220 tgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctctaaaa 276  Q
    |||||||||| || ||| || ||| ||||| |||||||| |||||||||||||||||    
T  50876371 tgagtatgatagagaaagttgtcaaaaaattgttgtacaaatatcatttctctaaaa 50876427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 52727480 - 52727520
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||||||||||| || ||||||| |||||||||||||    
T  52727480 aaaaaattatcataaagtgattgtacaaatatcatttctct 52727520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 34442152 - 34442112
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  34442152 aaaaaattatcataaagtggttgtacaaatatcatttctct 34442112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 8805268 - 8805233
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcattt 268  Q
    ||||||||||||||||| ||||||||||||||||||    
T  8805268 aaaaattatcataaaatagttgtacatatatcattt 8805233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 37966425 - 37966362
Alignment:
Q  213 catcacgtgagtatgatggaaaaaattatcataaaatggttgtacatatatcatttctctaaaa 276  Q
    ||||| ||||||||||  |||||| || ||| ||| |||||||||| |||||||||||||||||    
T  37966425 catcatgtgagtatgagagaaaaagttgtcacaaattggttgtacaaatatcatttctctaaaa 37966362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 4319807 - 4319765
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctctaaa 275  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||    
T  4319807 aaaaattattataaaatagttgtacaaatatcatttctctaaa 4319765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 12784432 - 12784470
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctc 271  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  12784432 aaaaattattataaaatggttgtacaaatatcatttctc 12784470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 10288188 - 10288148
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctcta 273  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
T  10288188 aaaaattatcacaaaatagttgtacaaatatcatttctcta 10288148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 10749711 - 10749751
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||| ||| |||||||||||||||||| |||||||||||||    
T  10749711 aaaagattgtcataaaatggttgtacaaatatcatttctct 10749751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 13553185 - 13553145
Alignment:
Q  233 aaaaattatcataaaatggttgtacatatatcatttctcta 273  Q
    ||||||||||| ||| |||||||||| ||||||||||||||    
T  13553185 aaaaattatcacaaagtggttgtacaaatatcatttctcta 13553145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 41353529 - 41353569
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||||||||||| || ||||||| |||||||||||||    
T  41353529 aaaaaattatcataaattgattgtacaaatatcatttctct 41353569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 43994045 - 43994085
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||| ||||||||||||||||||  ||||||||||||    
T  43994045 aaaaaattgtcataaaatggttgtacaactatcatttctct 43994085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 213883 - 213920
Alignment:
Q  234 aaaattatcataaaatggttgtacatatatcatttctc 271  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  213883 aaaattatcataaattggttgtacatgtatcatttctc 213920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 27378 - 27338
Alignment:
Q  232 aaaaaattatcataaaatggttgtacatatatcatttctct 272  Q
    |||||||| ||| ||||||| ||||||||||||||||||||    
T  27378 aaaaaattgtcacaaaatggatgtacatatatcatttctct 27338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University