View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_72 (Length: 360)
Name: NF6866A_low_72
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_72 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 32898644 - 32898994
Alignment:
| Q |
1 |
tctccctacactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaacaacactgatctaaaggagcacgtgtcct |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898644 |
tctccctacaccgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaacaacactgatctaaaggagcacgtgtcct |
32898743 |
T |
|
| Q |
101 |
gtttctccgcaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaatggaagttttgatctcgtttcaccttctatgaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
32898744 |
gtttctccacaacatctacaacatcaaatgttgtctctgttcacaacaacttcaacagcaacagcaatggaagttttgatcttgtttcaccttctatgaa |
32898843 |
T |
|
| Q |
201 |
tgcaacaatggatccttttgcaaggtttcagaggaatgtcggtgtttctgcttttcctagcttgagatcactacaagataatcttcagcttcctttcttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898844 |
tgcaacaatggatccttttgcaaggtttcagaggaatgtcggtgtttctgcttttcctagcttgagatcactacaagataatcttcagcttcctttcttt |
32898943 |
T |
|
| Q |
301 |
ttctcctcggcggccgcggcgcagccttttcccggtggtggtgatattctt |
351 |
Q |
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| T |
32898944 |
ttctcctcggccgccgcggcgcagccttttcccggtggtggtgatattctt |
32898994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 69 - 224
Target Start/End: Original strand, 17415041 - 17415196
Alignment:
| Q |
69 |
caacaacactgatctaaaggagcacgtgtcctgtttctccgcaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaat |
168 |
Q |
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| T |
17415041 |
caacaacactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtcgctgcccacaacaacttcagtaacaacaacaat |
17415140 |
T |
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| Q |
169 |
ggaagttttgatctcgtttcaccttctatgaatgcaacaatggatccttttgcaag |
224 |
Q |
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||||| |||||||| ||||| |||||||||||||| ||||| |||||||||||||| |
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| T |
17415141 |
ggaagctttgatcttgtttctccttctatgaatgctacaattgatccttttgcaag |
17415196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 20409776 - 20409621
Alignment:
| Q |
69 |
caacaacactgatctaaaggagcacgtgtcctgtttctccgcaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaat |
168 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| ||||| |||||||||| |
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| T |
20409776 |
caacaacactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtcgttgcccacaacaacttcagtaacaacaacaat |
20409677 |
T |
|
| Q |
169 |
ggaagttttgatctcgtttcaccttctatgaatgcaacaatggatccttttgcaag |
224 |
Q |
| |
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|
| T |
20409676 |
ggaagctttgatcttgtttctccttctatgaatgctacaattgatccttttgcaag |
20409621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 69 - 224
Target Start/End: Original strand, 46312565 - 46312720
Alignment:
| Q |
69 |
caacaacactgatctaaaggagcacgtgtcctgtttctccgcaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaat |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| ||||| |||||||||| |
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| T |
46312565 |
caacaacactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtcgttgcccacaacaacttcagtaacaacaacaat |
46312664 |
T |
|
| Q |
169 |
ggaagttttgatctcgtttcaccttctatgaatgcaacaatggatccttttgcaag |
224 |
Q |
| |
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||||| |||||||| ||||| |||||||||||||| ||||| |||||||||||||| |
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| T |
46312665 |
ggaagctttgatcttgtttctccttctatgaatgctacaattgatccttttgcaag |
46312720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 69 - 224
Target Start/End: Original strand, 40169137 - 40169283
Alignment:
| Q |
69 |
caacaacactgatctaaaggagcacgtgtcctgtttctccgcaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaat |
168 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||| |||||||||| |
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| T |
40169137 |
caacaacaccgatctaaaggagcacgtgtcctgtttctcc---------acaacatcaaatgttgtcgctgcccacaacaacttcagtaacaacaacaat |
40169227 |
T |
|
| Q |
169 |
ggaagttttgatctcgtttcaccttctatgaatgcaacaatggatccttttgcaag |
224 |
Q |
| |
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|
| T |
40169228 |
ggaagctttgatcttgtttctccttctatgaatgctacaattgatccttttgcaag |
40169283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 96 - 202
Target Start/End: Complemental strand, 46483093 - 46482987
Alignment:
| Q |
96 |
gtcctgtttctccgcaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaatggaagttttgatctcgtttcaccttct |
195 |
Q |
| |
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||||| ||||||| ||| ||||| ||||||||||||||||||||| ||||||| ||||| | |||||||||||||||| |||||||| ||||| |||||| |
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| T |
46483093 |
gtcctatttctccacaatatctagaacatcaaatgttgtctctgtccacaacaacttcagcagcaacaacaatggaagctttgatcttgtttctccttct |
46482994 |
T |
|
| Q |
196 |
atgaatg |
202 |
Q |
| |
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| ||||| |
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| T |
46482993 |
acgaatg |
46482987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 46482960 - 46482880
Alignment:
| Q |
243 |
tgtttctgcttttcctagcttgagatcactacaagataatcttcagcttcctttctttttctcctcggcggccgcggcgca |
323 |
Q |
| |
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||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
46482960 |
tgtttctatttttcctagattgaggtcactacaagataatctccagcttcctttctttttctccacggcggccgcggcgca |
46482880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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