View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_73 (Length: 354)
Name: NF6866A_low_73
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 48290558 - 48290906
Alignment:
| Q |
1 |
gagatgaatgagctaacgttgatgaaagcaaatacagtggttgatgttatcaattaaatgaaatgaaatgccctaaaagtttagacattatcaaccaaaa |
100 |
Q |
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| T |
48290558 |
gagatgaatgagctaacgttgatgaaagcaattacagtggttgatgttatcaattaaatgaaatgaaatgccctaaaagtttagacattatcaaccaaaa |
48290657 |
T |
|
| Q |
101 |
aaggcagtagtgttggctaattgtgattttcgcaagctaagctataatcaatttactattaattataactagattaaagatgctacatctctttcttcat |
200 |
Q |
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| T |
48290658 |
aaggcagtagtgttggctaattgtgatttttgcaagctaagctataatcaatttactattaattataactagattaaagatgctacatctctttcttcat |
48290757 |
T |
|
| Q |
201 |
gtccctttccatttacaccactcattgcaagctttgaacgcttcttatatttcttattatcaacatctacctctttaattttctgttttctcaaaccttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48290758 |
gtccctttccatttacaccactcattgcaagctttgaacgcttcttatatttcttattatcaacatctacctctttaattttctgttttctcaaaccttc |
48290857 |
T |
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| Q |
301 |
ttcacatttaattaatttcatcaattttggccaataaaaggagagaaat |
349 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48290858 |
ttcacatttaattaatttcatcaattttgaccaataaaaggagagaaat |
48290906 |
T |
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