View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_74 (Length: 353)
Name: NF6866A_low_74
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 35047819 - 35048137
Alignment:
| Q |
13 |
gaaacacaaataacaactcaagcgattctccttacactaactactctaagaagttttttctcttcatgaatcaaataatagacagaaatttgagtagtga |
112 |
Q |
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||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
35047819 |
gaaacacaaataacaactcaaacaattttccttacactaactactctaagaagttttttctcttcatggatcaaataatagacataaatttgagtagtga |
35047918 |
T |
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| Q |
113 |
gactcacatttagttgaaaatgatgaccattcttagacatccataaaggtctcaactccaaactggaagtactcgagactataccctgaggtaacgcttc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047919 |
aactcacatttagttgaaaatgatgaccattcttagacatccataaaggtctcaactccaaactggaagtactcgagactataccctgaggtaacgcttc |
35048018 |
T |
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| Q |
213 |
acttccactaggcctgcactgcttctactaaacaagataaacagatataagcaccaaacctaaacatccaaaataatacatgatcaagagacagaaccaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35048019 |
acttccactaggcctgcactgcttctactaaacaagataaacagatataagcaccaaacctaaacatccaaaataatacatgatcaagagacagaaccaa |
35048118 |
T |
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| Q |
313 |
aagtattaagagaaaacaa |
331 |
Q |
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||||||||||||||||||| |
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| T |
35048119 |
aagtattaagagaaaacaa |
35048137 |
T |
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