View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_75 (Length: 353)

Name: NF6866A_low_75
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_75
NF6866A_low_75
[»] chr6 (9 HSPs)
chr6 (10-347)||(22735491-22735831)
chr6 (301-347)||(9031760-9031806)
chr6 (301-347)||(5134489-5134536)
chr6 (312-347)||(8176001-8176036)
chr6 (312-347)||(8309169-8309204)
chr6 (312-347)||(22730757-22730792)
chr6 (312-347)||(34524880-34524915)
chr6 (301-347)||(17176143-17176189)
chr6 (301-346)||(6219348-6219393)
[»] chr4 (7 HSPs)
chr4 (301-348)||(12585613-12585660)
chr4 (312-347)||(20610744-20610779)
chr4 (312-347)||(49039500-49039535)
chr4 (312-346)||(21023407-21023441)
chr4 (314-347)||(20166323-20166356)
chr4 (312-347)||(12820460-12820496)
chr4 (312-348)||(54264933-54264969)
[»] chr1 (13 HSPs)
chr1 (312-347)||(47645851-47645886)
chr1 (301-347)||(42801873-42801919)
chr1 (311-348)||(5862132-5862169)
chr1 (312-348)||(16182814-16182850)
chr1 (312-347)||(5684127-5684162)
chr1 (312-347)||(9768864-9768899)
chr1 (312-347)||(18003821-18003856)
chr1 (314-347)||(42908778-42908811)
chr1 (312-348)||(7015741-7015777)
chr1 (312-348)||(9769634-9769670)
chr1 (311-347)||(12489974-12490010)
chr1 (311-347)||(18976007-18976043)
chr1 (312-344)||(28284008-28284040)
[»] chr2 (5 HSPs)
chr2 (313-347)||(44132618-44132652)
chr2 (312-348)||(36277756-36277792)
chr2 (312-348)||(6496444-6496480)
chr2 (311-347)||(19352870-19352906)
chr2 (312-348)||(34644539-34644575)
[»] chr3 (7 HSPs)
chr3 (311-347)||(12143462-12143498)
chr3 (312-348)||(33533208-33533244)
chr3 (312-347)||(16874245-16874280)
chr3 (312-347)||(30745786-30745821)
chr3 (313-347)||(51017796-51017830)
chr3 (317-346)||(46969008-46969037)
chr3 (312-348)||(23237367-23237403)
[»] scaffold0712 (1 HSPs)
scaffold0712 (312-347)||(4525-4560)
[»] scaffold0709 (1 HSPs)
scaffold0709 (312-347)||(4545-4580)
[»] scaffold0219 (1 HSPs)
scaffold0219 (296-347)||(21019-21070)
[»] scaffold0168 (1 HSPs)
scaffold0168 (312-347)||(34088-34123)
[»] chr7 (10 HSPs)
chr7 (312-347)||(7465471-7465506)
chr7 (312-347)||(17305445-17305480)
chr7 (312-347)||(24427368-24427403)
chr7 (317-347)||(23799310-23799340)
chr7 (301-347)||(35195837-35195883)
chr7 (301-346)||(38032911-38032956)
chr7 (312-348)||(14772389-14772425)
chr7 (312-348)||(15222841-15222877)
chr7 (301-345)||(27726426-27726470)
chr7 (311-347)||(37995601-37995636)
[»] chr5 (8 HSPs)
chr5 (312-347)||(11246549-11246584)
chr5 (317-348)||(17557040-17557071)
chr5 (296-347)||(25660901-25660952)
chr5 (312-347)||(36742022-36742057)
chr5 (312-347)||(38040271-38040306)
chr5 (313-347)||(42781649-42781683)
chr5 (301-348)||(3102181-3102229)
chr5 (312-347)||(6806695-6806731)
[»] chr8 (3 HSPs)
chr8 (311-348)||(43554453-43554490)
chr8 (312-348)||(24572905-24572941)
chr8 (295-347)||(41793028-41793079)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 22735491 - 22735831
Alignment:
Q  10 attattctctcgttgaacaagaattgttactactccttagtttcaatgaccccattatgaatgacacgtcaatcgtaatgctaatagttacaaaaataaa 109  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22735491 attattctctctttgaacaagaattgttactactccttactttcaatgaccccattatgaatgacacgtcaatcgtaatgctaatagttacaaaaataaa 22735590  T
Q  110 gcaattattctatgtatgtacgtagggttcannnnnnncaatctaattttagagagcaaaagcaatgaatacatttttt---attttcacatggtacttt 206  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  22735591 gcaattattctatgtatgtacgtagggttcatttttttcaatctaattttagagagcaagagcaatgaatacattttttttaattttcacatggtacttt 22735690  T
Q  207 agtattttgaattcagaagaaagaacaagatgagagttccattaattgttgcatggtggttatagcattgagctttattaatagtggacatatcgtcccc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||    
T  22735691 agtattttgaattcagaagaaagaacaagatgagagttccattaattgttgcatggtggttatagcattgagcttcattaatagttgacatattgtctcc 22735790  T
Q  307 gtagacatagctcagttggcagagacatgcattgttatatg 347  Q
    || | |||| |||||||| |||||||||| |||||||||||    
T  22735791 gttggcataactcagttgacagagacatgtattgttatatg 22735831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 9031760 - 9031806
Alignment:
Q  301 gtccccgtagacatagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||||    
T  9031760 gtccccgtgaacatagctcagttggcagggacatgcattgttatatg 9031806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 5134536 - 5134489
Alignment:
Q  301 gtccccgtagacatagctcagttggcagagac-atgcattgttatatg 347  Q
    |||||||||  ||||||||||||||||||||| |||||||||||||||    
T  5134536 gtccccgtaagcatagctcagttggcagagacaatgcattgttatatg 5134489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 8176001 - 8176036
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||| ||||||||||||||||||||||    
T  8176001 catagctcagttgacagagacatgcattgttatatg 8176036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 8309169 - 8309204
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  8309169 catagctcagttggcagggacatgcattgttatatg 8309204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 22730792 - 22730757
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    |||| |||||||||||||||||||||||||||||||    
T  22730792 cataactcagttggcagagacatgcattgttatatg 22730757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 34524880 - 34524915
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  34524880 catagctcagttggcagggacatgcattgttatatg 34524915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 17176143 - 17176189
Alignment:
Q  301 gtccccgtagacatagctcagttggcagagacatgcattgttatatg 347  Q
    |||| |||| |||||||||||||| ||| ||||||||||||||||||    
T  17176143 gtcctcgtaaacatagctcagttgacagggacatgcattgttatatg 17176189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 6219348 - 6219393
Alignment:
Q  301 gtccccgtagacatagctcagttggcagagacatgcattgttatat 346  Q
    ||||||||  |||||||||||||||||| |||||||||| ||||||    
T  6219348 gtccccgtgaacatagctcagttggcagggacatgcattattatat 6219393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 12585660 - 12585613
Alignment:
Q  301 gtccccgtagacatagctcagttggcagagacatgcattgttatatgt 348  Q
    ||||||||| ||||| |||||||||||| |||||||||||||||||||    
T  12585660 gtccccgtaaacataactcagttggcagggacatgcattgttatatgt 12585613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 20610744 - 20610779
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  20610744 catagctcagttggcagggacatgcattgttatatg 20610779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 49039535 - 49039500
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  49039535 catagctcagttggcagggacatgcattgttatatg 49039500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 21023441 - 21023407
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatat 346  Q
    |||||||||||||||||| ||||||||||||||||    
T  21023441 catagctcagttggcagaaacatgcattgttatat 21023407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 20166323 - 20166356
Alignment:
Q  314 tagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||| ||||||||||||||||||    
T  20166323 tagctcagttggcagggacatgcattgttatatg 20166356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 12820496 - 12820460
Alignment:
Q  312 catagctcagttggcagagac-atgcattgttatatg 347  Q
    ||||||||||||||||||||| |||||||||||||||    
T  12820496 catagctcagttggcagagacaatgcattgttatatg 12820460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 54264933 - 54264969
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatgt 348  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  54264933 catagctcagctggcagaaacatgcattgttatatgt 54264969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 47645886 - 47645851
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||||||||||||||||||||||    
T  47645886 catagctcagttggcagagacatgcattgttatatg 47645851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 42801873 - 42801919
Alignment:
Q  301 gtccccgtagacatagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||||    
T  42801873 gtccccgtgaacatagctcagttgacagagacatgcattgttatatg 42801919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 5862132 - 5862169
Alignment:
Q  311 acatagctcagttggcagagacatgcattgttatatgt 348  Q
    |||||||||||||||||| |||||||||||||||||||    
T  5862132 acatagctcagttggcagggacatgcattgttatatgt 5862169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 16182814 - 16182850
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatgt 348  Q
    |||||||||||||||||||||||||||| ||||||||    
T  16182814 catagctcagttggcagagacatgcattattatatgt 16182850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 5684127 - 5684162
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    |||||||||||||||||||||||||||| |||||||    
T  5684127 catagctcagttggcagagacatgcattattatatg 5684162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 9768899 - 9768864
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9768899 catagctcagttggcagggacatgcattgttatatg 9768864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 18003821 - 18003856
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  18003821 catagctcagttggcagggacatgcattgttatatg 18003856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 42908778 - 42908811
Alignment:
Q  314 tagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||| ||||||||||||||||||    
T  42908778 tagctcagttggcagggacatgcattgttatatg 42908811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 7015777 - 7015741
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatgt 348  Q
    ||||||||||||||| | |||||||||||||||||||    
T  7015777 catagctcagttggctgggacatgcattgttatatgt 7015741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 9769670 - 9769634
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatgt 348  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  9769670 catagctcagttggcagggacatgcattattatatgt 9769634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 12490010 - 12489974
Alignment:
Q  311 acatagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  12490010 acatagctcagttggcaaagacatgcatttttatatg 12489974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 18976007 - 18976043
Alignment:
Q  311 acatagctcagttggcagagacatgcattgttatatg 347  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  18976007 acatagctcaattgtcagagacatgcattgttatatg 18976043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 28284040 - 28284008
Alignment:
Q  312 catagctcagttggcagagacatgcattgttat 344  Q
    |||||||||||||||||||||||||||| ||||    
T  28284040 catagctcagttggcagagacatgcattattat 28284008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 44132652 - 44132618
Alignment:
Q  313 atagctcagttggcagagacatgcattgttatatg 347  Q
    |||||||||||||||||||||||||||||||||||    
T  44132652 atagctcagttggcagagacatgcattgttatatg 44132618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 36277792 - 36277756
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatgt 348  Q
    ||||||||||||||||| |||||||||||||||||||    
T  36277792 catagctcagttggcagtgacatgcattgttatatgt 36277756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 6496444 - 6496480
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatgt 348  Q
    |||||||||||||| || |||||||||||||||||||    
T  6496444 catagctcagttggaagggacatgcattgttatatgt 6496480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 19352870 - 19352906
Alignment:
Q  311 acatagctcagttggcagagacatgcattgttatatg 347  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  19352870 acataactcagttgacagagacatgcattgttatatg 19352906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 34644575 - 34644539
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatgt 348  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  34644575 catagctcagttgacagagatatgcattgttatatgt 34644539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 12143498 - 12143462
Alignment:
Q  311 acatagctcagttggcagagacatgcattgttatatg 347  Q
    |||||||||||||||||| ||||||||||||||||||    
T  12143498 acatagctcagttggcagggacatgcattgttatatg 12143462  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 33533208 - 33533244
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatgt 348  Q
    |||| ||||||||||||||||||||||||||||||||    
T  33533208 cataactcagttggcagagacatgcattgttatatgt 33533244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 16874280 - 16874245
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16874280 catagctcagttggcagggacatgcattgttatatg 16874245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 30745821 - 30745786
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  30745821 catagctcagttggcagggacatgcattgttatatg 30745786  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 51017796 - 51017830
Alignment:
Q  313 atagctcagttggcagagacatgcattgttatatg 347  Q
    |||||||||||||||| ||||||||||||||||||    
T  51017796 atagctcagttggcagggacatgcattgttatatg 51017830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 46969008 - 46969037
Alignment:
Q  317 ctcagttggcagagacatgcattgttatat 346  Q
    ||||||||||||||||||||||||||||||    
T  46969008 ctcagttggcagagacatgcattgttatat 46969037  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 23237367 - 23237403
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatgt 348  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  23237367 catagctcagttggcagggacatgcattattatatgt 23237403  T

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Target: scaffold0712 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 4525 - 4560
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  4525 catagctcagttggcagggacatgcattgttatatg 4560  T

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Target: scaffold0709 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 4545 - 4580
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  4545 catagctcagttggcagggacatgcattgttatatg 4580  T

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Target: scaffold0219 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 21070 - 21019
Alignment:
Q  296 atatcgtccccgtagacatagctcagttggcagagacatgcattgttatatg 347  Q
    |||||||| ||||  |||||||||||||| || |||||||||||||||||||    
T  21070 atatcgtctccgtgaacatagctcagttgacaaagacatgcattgttatatg 21019  T

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Target: scaffold0168 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 34123 - 34088
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  34123 catagctcagttggcagggacatgcattgttatatg 34088  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 7465471 - 7465506
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    |||||||||||||||||||||||||||| |||||||    
T  7465471 catagctcagttggcagagacatgcattattatatg 7465506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 17305480 - 17305445
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  17305480 catagctcagttggcagggacatgcattgttatatg 17305445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 24427368 - 24427403
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    |||| |||||||||||||||||||||||||||||||    
T  24427368 cataactcagttggcagagacatgcattgttatatg 24427403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 347
Target Start/End: Original strand, 23799310 - 23799340
Alignment:
Q  317 ctcagttggcagagacatgcattgttatatg 347  Q
    |||||||||||||||||||||||||||||||    
T  23799310 ctcagttggcagagacatgcattgttatatg 23799340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 35195837 - 35195883
Alignment:
Q  301 gtccccgtagacatagctcagttggcagagacatgcattgttatatg 347  Q
    |||||||||  ||||||||||||||||| |||||||||| |||||||    
T  35195837 gtccccgtaagcatagctcagttggcagggacatgcattattatatg 35195883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 38032956 - 38032911
Alignment:
Q  301 gtccccgtagacatagctcagttggcagagacatgcattgttatat 346  Q
    ||||||||  ||||| |||||||||||| |||||||||||||||||    
T  38032956 gtccccgtgaacataactcagttggcagggacatgcattgttatat 38032911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 14772425 - 14772389
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatgt 348  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  14772425 cataactcagttggcagagacatgcattgttacatgt 14772389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 15222877 - 15222841
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatgt 348  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  15222877 cataactcagttggcagagacatgcattgttacatgt 15222841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 27726470 - 27726426
Alignment:
Q  301 gtccccgtagacatagctcagttggcagagacatgcattgttata 345  Q
    ||||||||  |||||||||||||||||| |||||||||| |||||    
T  27726470 gtccccgtgaacatagctcagttggcagggacatgcattattata 27726426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 37995636 - 37995601
Alignment:
Q  311 acatagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||||||||||||| |||||||||    
T  37995636 acatagctcagttggcagagacatgca-tgttatatg 37995601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 11246584 - 11246549
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  11246584 catagctcagttggcagggacatgcattgttatatg 11246549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 348
Target Start/End: Original strand, 17557040 - 17557071
Alignment:
Q  317 ctcagttggcagagacatgcattgttatatgt 348  Q
    ||||||||||||||||||||||||||||||||    
T  17557040 ctcagttggcagagacatgcattgttatatgt 17557071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 347
Target Start/End: Original strand, 25660901 - 25660952
Alignment:
Q  296 atatcgtccccgtagacatagctcagttggcagagacatgcattgttatatg 347  Q
    |||||||||||||   ||||||||||||||||| || |||||||||||||||    
T  25660901 atatcgtccccgtgagcatagctcagttggcagggatatgcattgttatatg 25660952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 36742057 - 36742022
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    |||||||||||||||||||||||| |||||||||||    
T  36742057 catagctcagttggcagagacatgaattgttatatg 36742022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 38040271 - 38040306
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||||| ||||||||||||||||||    
T  38040271 catagctcagttggcagggacatgcattgttatatg 38040306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 42781683 - 42781649
Alignment:
Q  313 atagctcagttggcagagacatgcattgttatatg 347  Q
    |||||||||||||||| ||||||||||||||||||    
T  42781683 atagctcagttggcagggacatgcattgttatatg 42781649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 3102229 - 3102181
Alignment:
Q  301 gtccccgtagacatagctcagttggcagagac-atgcattgttatatgt 348  Q
    |||||||||  ||||||||||||||||| ||| ||||||||||||||||    
T  3102229 gtccccgtaagcatagctcagttggcagggacaatgcattgttatatgt 3102181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 6806731 - 6806695
Alignment:
Q  312 catagctcagttggcagagac-atgcattgttatatg 347  Q
    ||||||||||||||||||||| |||||||||||||||    
T  6806731 catagctcagttggcagagacaatgcattgttatatg 6806695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 43554453 - 43554490
Alignment:
Q  311 acatagctcagttggcagagacatgcattgttatatgt 348  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  43554453 acatagctcagttggcagcgacatccattgttatatgt 43554490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 24572941 - 24572905
Alignment:
Q  312 catagctcagttggcagagacatgcattgttatatgt 348  Q
    |||||||||||||||||||||||| || |||||||||    
T  24572941 catagctcagttggcagagacatgtatcgttatatgt 24572905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 41793079 - 41793028
Alignment:
Q  295 catatcgtccccgtagacatagctcagttggcagagacatgcattgttatatg 347  Q
    ||||||||||||||   ||||||||| ||||||| ||||||||||||||||||    
T  41793079 catatcgtccccgtgagcatagctcaattggcag-gacatgcattgttatatg 41793028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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