View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_79 (Length: 350)
Name: NF6866A_low_79
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_79 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 42211920 - 42212019
Alignment:
| Q |
149 |
actttttgtgacgtgcactttctctgtccttttctacggttttcattttctctcaaatctaaacccttcttctcacactttttgcagctgtcacgtgtgg |
248 |
Q |
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| T |
42211920 |
actttttgtgacgtgcactttctctgtccttttctacggttttcattttctctcaaatctaaacccttcttctcacactttttgcaactgtcacgtgtgg |
42212019 |
T |
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Target: scaffold0421 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 13336 - 13270
Alignment:
| Q |
80 |
atatttccatgccatgtcattggtggtagaaaagggtgtaccaaaagagtggtacatgaatcttttt |
146 |
Q |
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| T |
13336 |
atatttccatgccatgtcatcggtggtagaaaagggtgtaccaaaagagtggtacatgaatcttttt |
13270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 47345492 - 47345551
Alignment:
| Q |
80 |
atatttccatgccatgtcattggtggtagaaaagggtgtaccaaaagagtggtacatgaa |
139 |
Q |
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| T |
47345492 |
atatttccatgtcatgtcatcagtgctataaaagggtgtaccaaaagagtaatacatgaa |
47345551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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