View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_8 (Length: 509)
Name: NF6866A_low_8
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 34186424 - 34186932
Alignment:
| Q |
1 |
gagatgaaaacattggaggagttgaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaata |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186424 |
gagaagaaaacattggaggagttgaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaata |
34186523 |
T |
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| Q |
101 |
aggggacgtcgaaggagatttgggattctttaaagaagaaataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattggga |
200 |
Q |
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| T |
34186524 |
aggggacgtcgaaggagatttgggattctttaaagaagaaataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattggga |
34186623 |
T |
|
| Q |
201 |
aattttgtcgatgaaaagtggagaatctgttaacgactactttgctcgtaccctcacaattgcaaataagatgagaatgtatggtgaacaaatggcggat |
300 |
Q |
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| T |
34186624 |
aattttgtcgatgaaaagtggagaatctgttaacgactactttgctcgtaccctcacaattgcaaataagatgagaatgtatggtgaacaaatggcggat |
34186723 |
T |
|
| Q |
301 |
cttactgttatcgaaaagattcttcgctcaatgaccgctaggtacgattatgtagtatgttctattgaagaatcacatgaattggattccatggctgtag |
400 |
Q |
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| T |
34186724 |
cttactgttatcgaaaagattcttcgctcaatgaccgctaggtacgattatgtagtatgttctattgaagaatcacatgatttggattccatggctgtag |
34186823 |
T |
|
| Q |
401 |
atgaactacagagtagcttgttggtacacgagcaaagaatgaatggacataattcacacgaagagcaagtgctgaaagtaactcaagatgagacaagtgc |
500 |
Q |
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| T |
34186824 |
atgaactacagagtagcttgttggtacacgagcaaagaatgaatggacataattcacacgaagagcaagtgctgaaagtaactcaagatgagacaagtgc |
34186923 |
T |
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| Q |
501 |
tggccgtag |
509 |
Q |
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| T |
34186924 |
tggccgtag |
34186932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 11847703 - 11847771
Alignment:
| Q |
24 |
gaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaat |
92 |
Q |
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| T |
11847703 |
gaagttgatggacttgaaggccaaaaattacctttttcaagcaatttctcgtgatgtgcttgaaacaat |
11847771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 40 - 458
Target Start/End: Original strand, 518345 - 518763
Alignment:
| Q |
40 |
aaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaataaggggacgtcgaaggagatttgggattctttaaagaaga |
139 |
Q |
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|||||||||||| | |||||||||||||||||||||| |||||||||||||||| | || || | ||| ||||||||||| || ||| || || ||| |
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| T |
518345 |
aaggcaaaaaatcacctctttcaagcaattgatcgagttgtgcttgaaacaattttaaaaaacgagacatcgaaggagatcagg--ttccttgaaaaagt |
518442 |
T |
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| Q |
140 |
aataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcgatgaaaagtggagaatctgttaacgacta |
239 |
Q |
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||||||||| |||||||||| |||| ||||||||||||||||| | |||| || ||| | ||||| |||||| | ||||||||| ||| |||||| |
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| T |
518443 |
aataccaagtcactgctagagggaagcgagcacagcttcaggccctgtgacgtgactggtagattttacagatgaagaatggagaatcaattatcgacta |
518542 |
T |
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| Q |
240 |
ctttgctcgtaccctcacaattgcaaataagatgagaatgtatggtgaacaaatggcggatcttactgttatcgaaaagattct--tcgctcaatgaccg |
337 |
Q |
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| T |
518543 |
ttttgctcgaactgtcacaattgtaaacaagataagaatgcatggtgaacaaatgtcgaatcttactgttatcgaaaagattcttctcgctcaataacct |
518642 |
T |
|
| Q |
338 |
ctaggtacgattatgtagtatgttctattgaagaatcacatgaattggattccatggctgtagatgaactacagagtagcttgttggtacacgagcaaag |
437 |
Q |
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| T |
518643 |
ccaggtacgattatgtagtatgttctattgaataatctcatgatctagattccatgaatgcagatgaactccgaagtagctcgttggtacacgaacaacg |
518742 |
T |
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| Q |
438 |
aatgaatggacataattcaca |
458 |
Q |
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| T |
518743 |
aatgaatgaccacaattcaca |
518763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 40 - 458
Target Start/End: Complemental strand, 367316 - 366899
Alignment:
| Q |
40 |
aaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaataaggggacgtcgaaggagatttgggattctttaaagaaga |
139 |
Q |
| |
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|||||||||| | | |||||||||||||||||||||| ||||||||||| |||| | || || | ||| ||||||||||| || ||| || || ||| |
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| T |
367316 |
aaggcaaaaagtcacctctttcaagcaattgatcgagttgtgcttgaaataattttaaaaaacgagacatcgaaggagatcagg--ttccttgaaaaagt |
367219 |
T |
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| Q |
140 |
aataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcgatgaaaagtggagaatctgttaacgacta |
239 |
Q |
| |
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||||||||| |||||||||| |||| |||| || ||||||||| | |||| || ||| | ||||| |||||| | ||||||||| |||| ||||| |
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| T |
367218 |
aataccaagtcactgctagagggaagcgagctcaacttcaggccctgtgacgtgactggtagattttacagatgaagaatggagaatcaattaatgacta |
367119 |
T |
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| Q |
240 |
ctttgctcgtaccctcacaattgcaaataagatga-gaatgtatggtgaacaaatggcggatcttactgttatcgaaaagattcttcgctcaatgaccgc |
338 |
Q |
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|||||||| || |||||||||| ||| ||||| | |||||||| |||| |||||| || ||||||| ||| |||||||||||||||||||||| ||| | |
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| T |
367118 |
ttttgctcgaactctcacaattgtaaacaagattaagaatgtatagtgaccaaatgtcgaatcttaccgttgtcgaaaagattcttcgctcaataacctc |
367019 |
T |
|
| Q |
339 |
taggtacgattatgtagtatgttctattgaagaatcacatgaattggattccatggctgtagatgaactacagagtagcttgttggtacacgagcaaaga |
438 |
Q |
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| T |
367018 |
catgtacgattatgtagtgtgttctattgaataatctcatgatttagattccatgaatgcagatgaactccgaagtagctcgttggtacacgaacaacga |
366919 |
T |
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| Q |
439 |
atgaatggacataattcaca |
458 |
Q |
| |
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||||||| || |||||||| |
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| T |
366918 |
atgaatgaccacaattcaca |
366899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 14864448 - 14864521
Alignment:
| Q |
22 |
ttgaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattct |
95 |
Q |
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| T |
14864448 |
ttgaagctgaaggatctaaaggcaaagaattatttgtatcaagcaattgatcgagttgttctcgaaaccattct |
14864521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 26545341 - 26545396
Alignment:
| Q |
40 |
aaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattct |
95 |
Q |
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|||||||||||||| ||||||||||||||| ||| | |||||||||||||||||| |
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| T |
26545341 |
aaggcaaaaaattacctctttcaagcaatttctcgtgatgtgcttgaaacaattct |
26545396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 15592569 - 15592637
Alignment:
| Q |
24 |
gaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaat |
92 |
Q |
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|||| ||| ||| |||||||| |||||||| || |||||||||||| ||| | ||||||||||||||| |
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| T |
15592569 |
gaagttgatggacttgaaggccaaaaattacctttttcaagcaatttctcgtgatgtgcttgaaacaat |
15592637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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