View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_80 (Length: 348)

Name: NF6866A_low_80
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_80
NF6866A_low_80
[»] chr1 (8 HSPs)
chr1 (30-306)||(42471781-42472057)
chr1 (21-118)||(6768284-6768381)
chr1 (15-118)||(4076342-4076445)
chr1 (83-130)||(26793841-26793888)
chr1 (15-112)||(19806758-19806855)
chr1 (307-340)||(42471733-42471766)
chr1 (15-48)||(42472059-42472092)
chr1 (67-119)||(9383222-9383274)
[»] chr7 (5 HSPs)
chr7 (7-115)||(30793502-30793607)
chr7 (7-102)||(7682318-7682413)
chr7 (7-102)||(7667446-7667541)
chr7 (67-128)||(24429758-24429819)
chr7 (84-113)||(41145450-41145479)
[»] chr2 (1 HSPs)
chr2 (80-128)||(40626550-40626598)
[»] chr6 (1 HSPs)
chr6 (80-127)||(16342701-16342748)
[»] chr4 (3 HSPs)
chr4 (25-127)||(34666435-34666537)
chr4 (27-112)||(33451351-33451436)
chr4 (67-115)||(2183363-2183411)
[»] chr3 (3 HSPs)
chr3 (27-117)||(7038632-7038722)
chr3 (67-113)||(20524920-20524966)
chr3 (15-124)||(45818592-45818701)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 42472057 - 42471781
Alignment:
Q  30 ataaaataaacctattacttatcctattatattgcttctttgtaatcttaatccttaatttttggtggattaacaacctgatagcataaagctatcaaat 129  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||     
T  42472057 ataaaataaacctattacttatcttatcctattgcttctttgtaattttaatccttagtttttggtgggttaacaacctgatagcataaagctatcaaac 42471958  T
Q  130 gcgcattctctctttatgaggaaacctccttccacacccagcttcaacaattttcatgttctattcnnnnnnnnnnnnnnnnnnccttaaatttcttccc 229  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||                   |||||||||||||||    
T  42471957 gcgcattctctctttatgaggaaacctccttcgacacccagcttcaacgtttttcatgttctattcttttttcttttttttttttcttaaatttcttccc 42471858  T
Q  230 aatcgatatcaaatccaatcacttttcttcatgctttgtttcttcaatagatttccttccccaatcaatttggttgc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42471857 aatcgatatcaaatccaatcacttttcttcatgctttgtttctccaatagatttccttccccaatcaatttggttgc 42471781  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 6768284 - 6768381
Alignment:
Q  21 tagaaaatgataaaataaacctattacttatcctattatattgcttctttgtaatcttaatccttaatttttggtggattaacaacctgatagcataa 118  Q
    |||||||||||||| ||||| |||| | ||||||||| |||     |||||| || || |||||||||||||||||| |||  |||||||||||||||    
T  6768284 tagaaaatgataaattaaacttatttcctatcctattctatccaacctttgttatttttatccttaatttttggtgggttaggaacctgatagcataa 6768381  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 4076445 - 4076342
Alignment:
Q  15 catcagtagaaaatgataaaataaacctattacttatcctattatattgcttctttgtaatcttaatccttaatttttggtggattaacaacctgatagc 114  Q
    ||||| ||| ||| |||||| ||||||||||||| |||||||  ||||   |||||||  |  ||||||||| ||||||||||||||  ||||||||||     
T  4076445 catcaataggaaaggataaattaaacctattactaatcctatcctattcactctttgtttttctaatccttagtttttggtggattaggaacctgatagg 4076346  T
Q  115 ataa 118  Q
    ||||    
T  4076345 ataa 4076342  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 26793841 - 26793888
Alignment:
Q  83 cttaatttttggtggattaacaacctgatagcataaagctatcaaatg 130  Q
    |||| |||||||||| ||| ||||||||||||||||| ||||||||||    
T  26793841 cttagtttttggtgggttagcaacctgatagcataaaactatcaaatg 26793888  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 19806855 - 19806758
Alignment:
Q  15 catcagtagaaaatgataaaataaacctattacttatcctattatattgcttctttgtaatcttaatccttaatttttggtggattaacaacctgata 112  Q
    ||||| ||| ||| |||||| |||||||||| || |||||||  ||||   |||||||  |  ||||||||| |||||||||| ||||||||||||||    
T  19806855 catcaataggaaaggataaattaaacctatttctaatcctatcctattcactctttgtttttctaatccttagtttttggtgggttaacaacctgata 19806758  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 340
Target Start/End: Complemental strand, 42471766 - 42471733
Alignment:
Q  307 aaaataccatttacgattttccactatattcttc 340  Q
    ||||||||||||||||||||||||||| ||||||    
T  42471766 aaaataccatttacgattttccactattttcttc 42471733  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 42472092 - 42472059
Alignment:
Q  15 catcagtagaaaatgataaaataaacctattact 48  Q
    ||||||||| ||||||||||||||||||||||||    
T  42472092 catcagtaggaaatgataaaataaacctattact 42472059  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 9383274 - 9383222
Alignment:
Q  67 ctttgtaatcttaatccttaatttttggtggattaacaacctgatagcataaa 119  Q
    |||||| || || |||||||||||||| ||| ||| |||||||||||||||||    
T  9383274 ctttgttattttcatccttaatttttgatgggttagcaacctgatagcataaa 9383222  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 30793502 - 30793607
Alignment:
Q  7 gtttgattcatcagtagaaaatgataaaataaacctattacttatcctattatattgcttctttgtaatcttaatccttaatttttggtggattaacaac 106  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||| |||||| |   |||||||||  ||||||||    
T  30793502 gtttgatgcatcagtagaaaaggataaaataaacctattacttatcctatcttattgcttctttgtaattttaatctt---tttttggtgtgttaacaac 30793598  T
Q  107 ctgatagca 115  Q
     ||||||||    
T  30793599 atgatagca 30793607  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 7682318 - 7682413
Alignment:
Q  7 gtttgattcatcagtagaaaatgataaaataaacctattacttatcctattatattgcttctttgtaatcttaatccttaatttttggtggattaa 102  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||||| |  ||||||||||||||||| |||||||| ||||||| |||| ||||    
T  7682318 gtttgatgcatcagtaggaaaggataaaataaacctattacttatcctttcctattgcttctttgtaattttaatcctgaatttttagtgggttaa 7682413  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 7667446 - 7667541
Alignment:
Q  7 gtttgattcatcagtagaaaatgataaaataaacctattacttatcctattatattgcttctttgtaatcttaatccttaatttttggtggattaa 102  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||||||  ||  |||||||||||||||||  ||||||| | ||||| |||| ||||    
T  7667446 gtttgatgcatcaatagaaaaggataaaataaacctattacttatctcatcctattgcttctttgtaattgtaatcctcagtttttagtgggttaa 7667541  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 24429758 - 24429819
Alignment:
Q  67 ctttgtaatcttaatccttaatttttggtggattaacaacctgatagcataaagctatcaaa 128  Q
    |||||| || || ||||||| |||||||||| ||| ||||||||||||||||||||||||||    
T  24429758 ctttgttatttttatccttagtttttggtgggttagcaacctgatagcataaagctatcaaa 24429819  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 41145479 - 41145450
Alignment:
Q  84 ttaatttttggtggattaacaacctgatag 113  Q
    ||||||||||||||||||||||||||||||    
T  41145479 ttaatttttggtggattaacaacctgatag 41145450  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 40626550 - 40626598
Alignment:
Q  80 atccttaatttttggtggattaacaacctgatagcataaagctatcaaa 128  Q
    |||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  40626550 atccttaaattttggtgggttaacaacctgatagcataaagctttcaaa 40626598  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 16342748 - 16342701
Alignment:
Q  80 atccttaatttttggtggattaacaacctgatagcataaagctatcaa 127  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  16342748 atccttaatttttggtgggttagcaacctgatagcataaatctatcaa 16342701  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 34666435 - 34666537
Alignment:
Q  25 aaatgataaaataaacctattacttatcctattatattgcttctttgtaatcttaatccttaatttttggtggattaacaacctgatagcataaagctat 124  Q
    |||||||||  |||||||||| || ||| |||  |||| | ||||| | || || |||| ||| |||| |||| ||| ||||||||||||||||||||||    
T  34666435 aaatgataacttaaacctatttctaatcatatcctattccctctttcttatttttatccgtaactttttgtgggttagcaacctgatagcataaagctat 34666534  T
Q  125 caa 127  Q
    |||    
T  34666535 caa 34666537  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 33451351 - 33451436
Alignment:
Q  27 atgataaaataaacctattacttatcctattatattgcttctttgtaatcttaatccttaatttttggtggattaacaacctgata 112  Q
    ||||||||||||||||||||||  | ||||  ||||  | |||||||||  ||||||||| |||||| ||| |||||||| |||||    
T  33451351 atgataaaataaacctattactacttctatcctattcatcctttgtaattataatccttagtttttgatgggttaacaacatgata 33451436  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 2183363 - 2183411
Alignment:
Q  67 ctttgtaatcttaatccttaatttttggtggattaacaacctgatagca 115  Q
    |||||| || || |||||||||||||||||| ||| |||||||||||||    
T  2183363 ctttgttatttttatccttaatttttggtgggttagcaacctgatagca 2183411  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 7038632 - 7038722
Alignment:
Q  27 atgataaaataaacctattacttatcctattatattgcttctttgtaatcttaatccttaatttttggtggattaacaacctgatagcata 117  Q
    |||||||| ||||||||||||| |||||||  ||||  |  ||||||||  ||||||||| |||||| ||| ||| |||| ||||||||||    
T  7038632 atgataaattaaacctattactaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatagcata 7038722  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 20524920 - 20524966
Alignment:
Q  67 ctttgtaatcttaatccttaatttttggtggattaacaacctgatag 113  Q
    ||||||||| ||||||||| ||||||||||| |||||||| ||||||    
T  20524920 ctttgtaattttaatccttgatttttggtgggttaacaacttgatag 20524966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 45818701 - 45818592
Alignment:
Q  15 catcagtagaaaatgataaaataaacctattacttatcctattatattgcttctttgtaatcttaatccttaatttttggtggattaacaacctgatagc 114  Q
    ||||||||| ||| |||||||||||||||||  |||||||||   |||  ||||||||  | || ||||||| |||||||||  ||  |||| |||||||    
T  45818701 catcagtagcaaaagataaaataaacctattgtttatcctatctcattcattctttgttgtttttatccttagtttttggtgagttggcaacttgatagc 45818602  T
Q  115 ataaagctat 124  Q
    ||||| ||||    
T  45818601 ataaacctat 45818592  T

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