View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_81 (Length: 348)
Name: NF6866A_low_81
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 5 - 335
Target Start/End: Original strand, 4274298 - 4274629
Alignment:
| Q |
5 |
gtttggagttaaaggattggaacacgccaggaaaaatttaaagattgtttagtttaagaaaaacaaattcggattaacatttaggnnnnnnnn-ttattg |
103 |
Q |
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| T |
4274298 |
gtttggaattaaaggattggaacacgcaaggaaaaatttaaagattgtttagtttaagaaaaacaaattcggattaacatttaggaaaaaaaaattattg |
4274397 |
T |
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| Q |
104 |
gacttgttagaatattttgtcgttaacactatatgtatgacatgaactgagtcagtagataagaataaagggaataacataaatttttccatttataaga |
203 |
Q |
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| T |
4274398 |
gacttattagaatattttgtcgtttacactatatgtatgacatgaactgagtcagtagataagaataaagggaataacataaatttttccatttacaaga |
4274497 |
T |
|
| Q |
204 |
ctcaacctcatatcgtacttaggagcaccaaactttcttgccacttgaaccaacattcgtcggtaaatttaaagatctttgaaatgacaatcgtaacatt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4274498 |
ttcaacctcatatcgtacttaggagcaccaaactttcttgccacttgaaccaacattcgtcggtaaatttaaagatctttgaaatgacaatcgtaacatt |
4274597 |
T |
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| Q |
304 |
aaggatagtaatggattgccacaatatcaaaa |
335 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4274598 |
aaggatagtaatggattgccacaatatcaaaa |
4274629 |
T |
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