View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_84 (Length: 343)
Name: NF6866A_low_84
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 43499747 - 43500057
Alignment:
| Q |
13 |
aatataagatattttctacagannnnnnnnaagtaattctatagaaaagttatgtgcttcagaaaatagaaagnnnnnnnnttaatgggatccaaattat |
112 |
Q |
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| T |
43499747 |
aatataagatattttctacagattttttttaaggaattctatagaaaagttatgtgcttcagaaaatagaaagaaaaaaaattaatgggatccaaattat |
43499846 |
T |
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| Q |
113 |
aagatttacatacgggcaagcaatgataattcatgtttacaatagacaacaacaagtttttcaagacaatcaaaaactggagttttcaggaacagagcca |
212 |
Q |
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| T |
43499847 |
aagatttacatacgggcaagcaatgataattcatgtttacaatagacaacaacaagtttttcaagacaatcaaaaactggagttttcaggaacagagcca |
43499946 |
T |
|
| Q |
213 |
accaaatgaaaataatatnnnnnnntgcaaagctttagaatctcccctcaaagtttcaaaagatgtcaatgttaattatttgtaatttttctatgcctga |
312 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43499947 |
accaaatgaaaataatataaaaaaatgcaaagctttagaatctcccctcaaagtttcaaaagatgtcaatgttaattacatgtaatttttctatgcctga |
43500046 |
T |
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| Q |
313 |
aaagttatttg |
323 |
Q |
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| T |
43500047 |
aaagttatttg |
43500057 |
T |
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