View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_88 (Length: 342)
Name: NF6866A_low_88
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 5 - 284
Target Start/End: Original strand, 10994077 - 10994356
Alignment:
| Q |
5 |
caagatataccagcagacgatgttagagatgatagtactagcgtttcttggtcttcctctggtgcatcaagaattgattccatggaacaagcctaataat |
104 |
Q |
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| T |
10994077 |
caagatataccagcagacgatgttagagatgatagtactagcgtttcttggtcttcctctggtgcatcaagaattgattccatggaacaagcctaataat |
10994176 |
T |
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| Q |
105 |
cccacccaatttgcatcgaacttcttggttcatggcatttctaaccaatcaaaattacactatgagtatcgatagcaatgtaagacaaaataaaacagat |
204 |
Q |
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| T |
10994177 |
ccctcccaatttgcatcgaacttcttggttcatggcatttctaaccaatcaaaattacactatgagtatcgatagcaatgtaagacaaaataaaacagat |
10994276 |
T |
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| Q |
205 |
gcaatcagactgatataatattgattacttgttagtgttttctctatttatttttcattatctgcaagttaaactgttgt |
284 |
Q |
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| T |
10994277 |
gcaatcagactgatataatattgattacttgttagtgttttctctatttatttttcattatctgcaagttaaactgttgt |
10994356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 10994455 - 10994391
Alignment:
| Q |
278 |
ctgttgtctttccttgtggtttccagttgttagggtctttagacccttttttcaccaaaaaataa |
342 |
Q |
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| T |
10994455 |
ctgttgtctttccttgtggtttccagttgttagggtctttagacccttttttcaccaaaaaataa |
10994391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 11005393 - 11005480
Alignment:
| Q |
5 |
caagatataccagcagacgatgttagagatgatagtactagcgtttcttggtcttcctctggtgcatcaagaattgattccatggaac |
92 |
Q |
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| T |
11005393 |
caagatctaccagctgaggattttagagatggtaatactagaagttcttggtcttcctctgatacatcaataaatgatttcatggaac |
11005480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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