View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_89 (Length: 341)
Name: NF6866A_low_89
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 58 - 335
Target Start/End: Original strand, 32524677 - 32524959
Alignment:
| Q |
58 |
agttaatttttcattatgaaaaacaatgctaaatatagtaggaatatattgtcgtagaatagatatgaagggtgtgtatacgttaataactaactattct |
157 |
Q |
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| T |
32524677 |
agttaattttccattatgaaaaacaatgctaaatatagtaggaatatattgtcgtagaatagatatgaaggatgtgtgtacgttaataactaactattct |
32524776 |
T |
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| Q |
158 |
cct-atccatttctactttca--ttttgttaacttccatttaaagaccctttaacgannnnnnnnnnnnnnnnnnnngtaaaattaagtaactacccact |
254 |
Q |
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| T |
32524777 |
cctaatccatttctactttcattttttgttaacttccatttaaagaccctttaacgattttttctcctttttgttttgtaaaattaagtaactacccact |
32524876 |
T |
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| Q |
255 |
aactc--ataaaaaatgcacgttaaggcataaccaacttctttgtattgattgtagttaccaaaaataaaacttcttcgtatt |
335 |
Q |
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| T |
32524877 |
atctcatataaaaaatgcacgttaaggcataaccaacttctttgtattgattgtagttaccaaaaataaaacttcttcgtatt |
32524959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 32524599 - 32524666
Alignment:
| Q |
7 |
tttggtgttagatatgaagctgatttttcggaagtaccctttgcgtgtgttagttaatttttcattat |
74 |
Q |
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| T |
32524599 |
tttggagttagatatgaacctgatttttcggaagtaccctttgcgtgtgttagttaatttttcattat |
32524666 |
T |
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