View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_9 (Length: 494)

Name: NF6866A_low_9
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_9
NF6866A_low_9
[»] chr8 (16 HSPs)
chr8 (67-246)||(39143528-39143712)
chr8 (282-484)||(39143289-39143494)
chr8 (7-71)||(39148902-39148966)
chr8 (383-483)||(9018039-9018145)
chr8 (383-457)||(29934698-29934773)
chr8 (159-227)||(40695231-40695299)
chr8 (422-480)||(8304649-8304707)
chr8 (383-481)||(21313772-21313873)
chr8 (418-474)||(15172800-15172857)
chr8 (383-447)||(17936355-17936420)
chr8 (284-333)||(36991275-36991324)
chr8 (284-337)||(37966549-37966602)
chr8 (422-475)||(39919336-39919389)
chr8 (182-246)||(10672519-10672583)
chr8 (383-458)||(19712734-19712810)
chr8 (159-223)||(37966427-37966491)
[»] chr7 (21 HSPs)
chr7 (384-484)||(3091960-3092061)
chr7 (383-482)||(32215579-32215679)
chr7 (400-484)||(20398841-20398926)
chr7 (383-480)||(21120565-21120663)
chr7 (400-475)||(43656110-43656185)
chr7 (384-460)||(38889925-38890002)
chr7 (159-208)||(47271131-47271180)
chr7 (387-474)||(38651280-38651368)
chr7 (418-480)||(27294233-27294295)
chr7 (400-460)||(13427965-13428026)
chr7 (416-475)||(14241281-14241341)
chr7 (384-447)||(22681441-22681505)
chr7 (384-451)||(45140133-45140201)
chr7 (160-201)||(989178-989219)
chr7 (418-475)||(29352709-29352766)
chr7 (159-200)||(33608860-33608901)
chr7 (383-475)||(42453622-42453716)
chr7 (387-475)||(17263376-17263465)
chr7 (384-459)||(41242163-41242240)
chr7 (401-475)||(8752472-8752548)
chr7 (159-226)||(44647988-44648056)
[»] chr3 (15 HSPs)
chr3 (384-484)||(16898617-16898718)
chr3 (383-482)||(12215499-12215598)
chr3 (383-484)||(21477740-21477842)
chr3 (384-450)||(10773247-10773314)
chr3 (159-226)||(550800-550867)
chr3 (383-463)||(30045242-30045323)
chr3 (383-460)||(7937458-7937536)
chr3 (384-459)||(30188555-30188632)
chr3 (384-447)||(29685640-29685704)
chr3 (383-460)||(25280388-25280466)
chr3 (159-200)||(566757-566798)
chr3 (284-333)||(2229902-2229951)
chr3 (154-199)||(37323951-37323996)
chr3 (159-226)||(24754681-24754749)
chr3 (159-226)||(24763678-24763746)
[»] chr4 (23 HSPs)
chr4 (383-482)||(17712672-17712772)
chr4 (383-457)||(135820-135895)
chr4 (383-460)||(26893346-26893424)
chr4 (400-475)||(42396713-42396789)
chr4 (383-475)||(13159698-13159792)
chr4 (160-202)||(33841789-33841831)
chr4 (383-451)||(14453917-14453986)
chr4 (383-447)||(44546641-44546706)
chr4 (400-464)||(52762925-52762990)
chr4 (383-482)||(13317639-13317739)
chr4 (159-226)||(23610666-23610734)
chr4 (384-459)||(39868326-39868402)
chr4 (159-226)||(56558303-56558371)
chr4 (383-437)||(21141948-21142003)
chr4 (420-475)||(28709150-28709205)
chr4 (384-459)||(1463335-1463412)
chr4 (284-333)||(12241515-12241564)
chr4 (383-447)||(17186283-17186348)
chr4 (384-475)||(46191195-46191288)
chr4 (159-246)||(3952153-3952241)
chr4 (159-226)||(19901901-19901969)
chr4 (159-226)||(34778445-34778513)
chr4 (384-447)||(55284841-55284905)
[»] chr5 (28 HSPs)
chr5 (384-482)||(1585448-1585547)
chr5 (383-484)||(17945874-17945976)
chr5 (383-484)||(17696033-17696135)
chr5 (418-484)||(15504872-15504938)
chr5 (384-463)||(13390352-13390432)
chr5 (383-451)||(21825215-21825285)
chr5 (159-206)||(32793418-32793465)
chr5 (384-447)||(26397286-26397350)
chr5 (383-474)||(24251286-24251379)
chr5 (383-459)||(40632647-40632724)
chr5 (159-227)||(3057138-3057206)
chr5 (159-226)||(11775817-11775885)
chr5 (153-201)||(18653410-18653458)
chr5 (384-451)||(23264111-23264179)
chr5 (159-226)||(37266755-37266823)
chr5 (400-460)||(7123947-7124009)
chr5 (400-460)||(18149377-18149438)
chr5 (384-475)||(21269879-21269972)
chr5 (384-475)||(21271893-21271986)
chr5 (384-459)||(37268333-37268410)
chr5 (384-456)||(38099573-38099646)
chr5 (383-451)||(41211573-41211642)
chr5 (159-226)||(4895718-4895786)
chr5 (423-455)||(16120013-16120045)
chr5 (384-447)||(23257178-23257242)
chr5 (159-226)||(34827216-34827284)
chr5 (159-226)||(35660592-35660660)
chr5 (384-451)||(37414637-37414705)
[»] chr1 (13 HSPs)
chr1 (384-482)||(16423196-16423295)
chr1 (383-451)||(7637637-7637706)
chr1 (384-475)||(10349521-10349614)
chr1 (159-226)||(24977264-24977331)
chr1 (383-447)||(20819602-20819667)
chr1 (384-455)||(39581426-39581499)
chr1 (284-333)||(40328195-40328244)
chr1 (383-451)||(44955710-44955779)
chr1 (383-458)||(12396334-12396408)
chr1 (159-246)||(50294046-50294134)
chr1 (161-208)||(30210695-30210742)
chr1 (383-447)||(24509316-24509380)
chr1 (422-475)||(34505219-34505272)
[»] scaffold0116 (1 HSPs)
scaffold0116 (411-484)||(42217-42290)
[»] scaffold0267 (1 HSPs)
scaffold0267 (384-484)||(10959-11060)
[»] chr6 (13 HSPs)
chr6 (387-484)||(2854115-2854213)
chr6 (383-451)||(18489745-18489814)
chr6 (383-451)||(16477625-16477695)
chr6 (406-460)||(31848075-31848131)
chr6 (159-226)||(4804472-4804540)
chr6 (383-460)||(4103082-4103161)
chr6 (383-453)||(31794672-31794743)
chr6 (159-213)||(1516190-1516244)
chr6 (159-213)||(1518279-1518333)
chr6 (383-459)||(5675490-5675568)
chr6 (383-475)||(20210255-20210348)
chr6 (383-475)||(22104278-22104371)
chr6 (159-199)||(30460875-30460915)
[»] chr2 (13 HSPs)
chr2 (384-481)||(33006689-33006787)
chr2 (384-480)||(10005227-10005324)
chr2 (384-459)||(3376135-3376211)
chr2 (383-475)||(39994657-39994750)
chr2 (159-208)||(2063396-2063445)
chr2 (400-455)||(26438353-26438409)
chr2 (159-226)||(35316849-35316917)
chr2 (422-460)||(11123667-11123705)
chr2 (383-459)||(45701187-45701265)
chr2 (284-333)||(10877621-10877670)
chr2 (154-206)||(11864913-11864966)
chr2 (170-226)||(41435198-41435255)
chr2 (400-447)||(42184106-42184154)
[»] scaffold0423 (1 HSPs)
scaffold0423 (383-458)||(10014-10091)
[»] scaffold0153 (1 HSPs)
scaffold0153 (383-451)||(24947-25016)
[»] scaffold0126 (1 HSPs)
scaffold0126 (159-227)||(22426-22494)
[»] scaffold0012 (1 HSPs)
scaffold0012 (159-226)||(208087-208155)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 67 - 246
Target Start/End: Complemental strand, 39143712 - 39143528
Alignment:
Q  67 atcaactatgtttgattgcatatatacatctctccaaggcaaccacaactttacgttggacctccatggaccgaacatgtt----tgtgggtcaagataa 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||| |||||||||    
T  39143712 atcaactatgtttgattgcatatatacatctctccaaggcaaccacaactttacattggacctccatggaccgaacatgtttatgtgtggatcaagataa 39143613  T
Q  163 atggagtttacaatttggagagagatatac-acaaaaaattgatggtagatcatatcactaagtgattcttaccatcatcaatta 246  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39143612 atggagtttataatttggagagagatatacaaaaaaaaattgatggtagatcatatcactaagtgagtcttaccatcatcaatta 39143528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 282 - 484
Target Start/End: Complemental strand, 39143494 - 39143289
Alignment:
Q  282 acctctccaaataaaagaaatgaagaaaaacattaatgaagaggatcctaactcatgtgggtcatggcccttgctatatttcgggtggaaannnnnnnnn 381  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||             
T  39143494 acctctccaaataaaagaaatggagaaaaacattaatgaagaggatcctaactcatgtgggtcatggcccttgctatatttcaggtggaaatttattttt 39143395  T
Q  382 n--gaacaaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaatac 478  Q
       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||    
T  39143394 tttgaacaaatcaatataggatatattgctcaaaagcaaagtgattcaccccgcacaaggtgtggtaaagtgatgaatcacctaatatctgttacaatac 39143295  T
Q  479 cacaac 484  Q
    ||||||    
T  39143294 cacaac 39143289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 39148966 - 39148902
Alignment:
Q  7 gtatatacgttgtaggggtctacacactcaaaattacaatgtgaatataattaagattgcatcaa 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39148966 gtatatacgttgtaggggtctacacactcaaaattacaatgtgaatataattaagattgcatcaa 39148902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 483
Target Start/End: Complemental strand, 9018145 - 9018039
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaa-caaagtgattca-----ccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaat 476  Q
    |||||||| || || | ||||||||||||||| ||||||||||||     || |||| ||| |||||||||||||||||||||||||||| ||||||||     
T  9018145 gaacaaattaaaatggaatatattgctcaaaagcaaagtgattcaattcacctcgcataaggtgtgctaaagtgatgaatcacctaatatctgttacaac 9018046  T
Q  477 accacaa 483  Q
    |||||||    
T  9018045 accacaa 9018039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 457
Target Start/End: Complemental strand, 29934773 - 29934698
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaag-tgattcaccccgcacaagttgtgctaaagtgatgaatc 457  Q
    ||||||||||| || | ||||||||||||||| | || |||||||||||||||||| |||||||| ||||||||||    
T  29934773 gaacaaatcaaaatggaatatattgctcaaaagagaggtgattcaccccgcacaaggtgtgctaacgtgatgaatc 29934698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 40695231 - 40695299
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtga 227  Q
    |||||||||||||  || ||||||||||||| ||||||||||| |||||||| || || ||||||||||    
T  40695231 ataaatggagtttggaagttggagagagatagacacaaaaaatagatggtaggtcctaccactaagtga 40695299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 480
Target Start/End: Original strand, 8304649 - 8304707
Alignment:
Q  422 attcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaatacca 480  Q
    |||||||||||||||  |||||||||||||||||||  ||||||| |||||||| ||||    
T  8304649 attcaccccgcacaaagtgtgctaaagtgatgaatcctctaatatctgttacaacacca 8304707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 481
Target Start/End: Complemental strand, 21313873 - 21313772
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaa---agtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaatacc 479  Q
    ||||||||||| || | ||||||| ||||||| ||   | |||||||||||| ||||| ||||||||| |||||||||| |||  || |||||||| |||    
T  21313873 gaacaaatcaaaatggaatatattactcaaaaaaacagaatgattcaccccgtacaaggtgtgctaaaatgatgaatcatctagaatctgttacaacacc 21313774  T
Q  480 ac 481  Q
    ||    
T  21313773 ac 21313772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 474
Target Start/End: Complemental strand, 15172857 - 15172800
Alignment:
Q  418 agtgattcaccccgcacaagttgtgctaaa-gtgatgaatcacctaatatttgttaca 474  Q
    |||||||||||||| ||||  ||||||||| |||||||||||| |||||| |||||||    
T  15172857 agtgattcaccccgaacaatatgtgctaaaagtgatgaatcacataatatctgttaca 15172800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 447
Target Start/End: Complemental strand, 17936420 - 17936355
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgctaaa 447  Q
    ||||||||||| ||   ||||||||||||||  ||| ||||||||||||||||||| |||||||||    
T  17936420 gaacaaatcaaaatgaaatatattgctcaaaggaaaagtgattcaccccgcacaaggtgtgctaaa 17936355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 36991324 - 36991275
Alignment:
Q  284 ctctccaaataaaagaaatgaagaaaaacattaatgaagaggatcctaac 333  Q
    ||||||||||  |||||||| ||||| |||| ||||||||||||||||||    
T  36991324 ctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaac 36991275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 37966549 - 37966602
Alignment:
Q  284 ctctccaaataaaagaaatgaagaaaaacattaatgaagaggatcctaactcat 337  Q
    |||||||||||||||||||| ||||| |||| ||| |||| |||| ||||||||    
T  37966549 ctctccaaataaaagaaatggagaaagacataaattaagaagatcttaactcat 37966602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 475
Target Start/End: Original strand, 39919336 - 39919389
Alignment:
Q  422 attcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaa 475  Q
    |||||||| ||||||| ||||||||| |||||||||||| ||| | ||||||||    
T  39919336 attcaccctgcacaaggtgtgctaaaatgatgaatcacccaatgtctgttacaa 39919389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 10672519 - 10672583
Alignment:
Q  182 gagagatatacacaaaaaattgatggtagatcatatcactaagtgattcttaccatcatcaatta 246  Q
    |||||||| ||||||||||| |||||| |||| || |||||||||| ||  |||||||| |||||    
T  10672519 gagagatagacacaaaaaatagatggtggatcctaccactaagtgagtcccaccatcattaatta 10672583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 458
Target Start/End: Complemental strand, 19712810 - 19712734
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaagtgatgaatca 458  Q
    ||||||||||| || | ||||||| ||||||| |  | || ||||||||||||||| |||||||| |||||||||||    
T  19712810 gaacaaatcaaaatggaatatattactcaaaaaaggaatggttcaccccgcacaagatgtgctaacgtgatgaatca 19712734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 37966427 - 37966491
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaaattgatggtagatcatatcactaa 223  Q
    ||||||||| ||| ||||||| ||||||||| ||||||||||| ||| |||| || || ||||||    
T  37966427 ataaatggaatttgcaatttgaagagagataaacacaaaaaatagattgtaggtcctaccactaa 37966491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 384 - 484
Target Start/End: Complemental strand, 3092061 - 3091960
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccaca 482  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||| ||| ||| ||| |||||||||||||||||||||||| |||||||| ||||||    
T  3092061 aacaaatcaaaataggatatattgctcaaaagcaaagtgattcaccctgcataaggtgtactaaagtgatgaatcacctaatatctgttacaacaccaca 3091962  T
Q  483 ac 484  Q
    ||    
T  3091961 ac 3091960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 32215579 - 32215679
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccac 481  Q
    ||||||||||| || | ||||||| ||||||| || |||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||| |||||    
T  32215579 gaacaaatcaaaatggaatatattactcaaaaacagagtgattcaccccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacaccac 32215678  T
Q  482 a 482  Q
    |    
T  32215679 a 32215679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 484
Target Start/End: Complemental strand, 20398926 - 20398841
Alignment:
Q  400 atatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccacaac 484  Q
    ||||||||||||||| || |||||||||||||| ||||  |||||||||||| ||||||| |||||||||||||||| ||||||||    
T  20398926 atatattgctcaaaagcagagtgattcaccccgtacaaaatgtgctaaagtggtgaatcatctaatatttgttacaacaccacaac 20398841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 383 - 480
Target Start/End: Complemental strand, 21120663 - 21120565
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaatacca 480  Q
    ||||||||||| || | ||||||||||||||| ||  |||||||| |||||||||| |||||||||||||||||||  ||||||| |||||||| ||||    
T  21120663 gaacaaatcaaaatggaatatattgctcaaaagcagtgtgattcatcccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacacca 21120565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 400 - 475
Target Start/End: Complemental strand, 43656185 - 43656110
Alignment:
Q  400 atatattgctcaaaacaaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaa 475  Q
    ||||||| |||||||  |||||||||| |||||||||| |||||||||||||||||||| ||||||| || |||||    
T  43656185 atatattactcaaaagtaagtgattcatcccgcacaaggtgtgctaaagtgatgaatcatctaatatctgatacaa 43656110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 460
Target Start/End: Complemental strand, 38890002 - 38889925
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaaag-tgattcaccccgcacaagttgtgctaaagtgatgaatcacc 460  Q
    ||||||| || |||| ||||||||||||||| |||| |||||||||||||||||| ||| ||||||||||||| ||||    
T  38890002 aacaaattaaaatagaatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtactaaagtgatgaaacacc 38889925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 47271131 - 47271180
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaaattgatggt 208  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  47271131 ataaatggagtttgcaatttggagagagatagacacaaaaaattgatggt 47271180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 38651368 - 38651280
Alignment:
Q  387 aaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttaca 474  Q
    ||||||| || | |||||||| |||||| || |||||||||||||||| ||| | |||||||||||||||||||||||| | |||||||    
T  38651368 aaatcaaaatggaatatattgttcaaaagcatagtgattcaccccgcataaggtatgctaaagtgatgaatcacctaatgtctgttaca 38651280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 27294295 - 27294233
Alignment:
Q  418 agtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaatacca 480  Q
    ||||||||||||| |||||| ||||||||| |||||||||  |||||||||||||||| ||||    
T  27294295 agtgattcaccccacacaaggtgtgctaaaatgatgaatcctctaatatttgttacaacacca 27294233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 13427965 - 13428026
Alignment:
Q  400 atatattgctcaaaacaaag-tgattcaccccgcacaagttgtgctaaagtgatgaatcacc 460  Q
    ||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||||    
T  13427965 atatattgctcaaaagaaaggtgattcaccccacacaaggtgtgttaaagtgatgaatcacc 13428026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 14241341 - 14241281
Alignment:
Q  416 aaagtgattcaccccgcacaagttgtgct-aaagtgatgaatcacctaatatttgttacaa 475  Q
    |||||||||||||||||||||| |||||| |||||||||||||||  ||||| ||||||||    
T  14241341 aaagtgattcaccccgcacaagatgtgctaaaagtgatgaatcacacaatatctgttacaa 14241281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 22681441 - 22681505
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaa 447  Q
    |||||||||| || | ||||||||||||||| || |||||||||||||||||||| |||||||||    
T  22681441 aacaaatcaaaatggaatatattgctcaaaagaagagtgattcaccccgcacaaggtgtgctaaa 22681505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 45140133 - 45140201
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaaag-tgattcaccccgcacaagttgtgctaaagtga 451  Q
    ||||||| || || |||||||||| |||||| |||| |||||||||||||||||| |||||||||||||    
T  45140133 aacaaattaaaatgggatatattgttcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtga 45140201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 989219 - 989178
Alignment:
Q  160 taaatggagtttacaatttggagagagatatacacaaaaaat 201  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  989219 taaatggagtttgcaatttggagagagatagacacaaaaaat 989178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 29352766 - 29352709
Alignment:
Q  418 agtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaa 475  Q
    ||||||||| || ||||||| |||||||||||||||||||  ||||||| ||||||||    
T  29352766 agtgattcatcctgcacaagatgtgctaaagtgatgaatcctctaatatctgttacaa 29352709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 33608860 - 33608901
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaaa 200  Q
    ||||||||||||| ||||||||||||||||| ||||||||||    
T  33608860 ataaatggagtttgcaatttggagagagataaacacaaaaaa 33608901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 42453716 - 42453622
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgct-aaagtgatgaatcacctaatatttgttacaa 475  Q
    |||||||| || || | ||||||||||||||  || |||||||||||||||| ||| |||||| ||||||||||||||   ||||| ||||||||    
T  42453716 gaacaaataaaaatggaatatattgctcaaacgaacagtgattcaccccgcataaggtgtgctaaaagtgatgaatcatacaatatctgttacaa 42453622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 17263465 - 17263376
Alignment:
Q  387 aaatcaatataggatatattgctcaaaacaaagtgattcaccccgcacaagttgtgct-aaagtgatgaatcacctaatatttgttacaa 475  Q
    ||||||| || | |||||||| ||||   |||||||||||||| | ||||| |||||| |||| ||||||||||| ||||| ||||||||    
T  17263465 aaatcaaaatggaatatattgttcaacgaaaagtgattcaccctgtacaaggtgtgctaaaagagatgaatcacccaatatctgttacaa 17263376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 459
Target Start/End: Original strand, 41242163 - 41242240
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgct-aaagtgatgaatcac 459  Q
    |||||||||| || | ||||||| ||||||  ||| ||||||||||||||||||| |||||| ||| |||||||||||    
T  41242163 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccgcacaaggtgtgctaaaattgatgaatcac 41242240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 475
Target Start/End: Complemental strand, 8752548 - 8752472
Alignment:
Q  401 tatattgctcaaaa-caaagtgattcaccccgcacaagttgtgct-aaagtgatgaatcacctaatatttgttacaa 475  Q
    ||||| |||||||| | ||||| ||||||||||||||| |||||| |||||||| || |||  ||||||||||||||    
T  8752548 tatatagctcaaaagcgaagtgtttcaccccgcacaaggtgtgctaaaagtgataaaacactcaatatttgttacaa 8752472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 44648056 - 44647988
Alignment:
Q  159 ataaatggagttta-caatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    |||||||||||||  ||| ||||||||||||| ||||||||||| |||||| ||||  | |||||||||    
T  44648056 ataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatccgaccactaagtg 44647988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 384 - 484
Target Start/End: Complemental strand, 16898718 - 16898617
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccaca 482  Q
    |||||||||| ||  |||||||||||||||| ||||||||||||| ||||||||  |||||||||||||||||||| ||||||| |||||||| ||||||    
T  16898718 aacaaatcaaaatgagatatattgctcaaaagcaaagtgattcactccgcacaaaatgtgctaaagtgatgaatcatctaatatatgttacaacaccaca 16898619  T
Q  483 ac 484  Q
    ||    
T  16898618 ac 16898617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 383 - 482
Target Start/End: Complemental strand, 12215598 - 12215499
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccaca 482  Q
    |||||||||||  | | ||||||| ||||||||| |||||||||||||||||||| ||||||||| |||||||||  |||||||||||||||| ||||||    
T  12215598 gaacaaatcaaagtggaatatattactcaaaacagagtgattcaccccgcacaaggtgtgctaaaatgatgaatcctctaatatttgttacaacaccaca 12215499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 383 - 484
Target Start/End: Original strand, 21477740 - 21477842
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaa-acaaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccac 481  Q
    ||||||||||| || | ||||||| |||||| ||| |||||||||||||||||||| ||||||||| |||||||||  ||||||| |||||||| |||||    
T  21477740 gaacaaatcaaaatggaatatattactcaaagacagagtgattcaccccgcacaaggtgtgctaaaatgatgaatcctctaatatctgttacaacaccac 21477839  T
Q  482 aac 484  Q
    |||    
T  21477840 aac 21477842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 384 - 450
Target Start/End: Complemental strand, 10773314 - 10773247
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaaag-tgattcaccccgcacaagttgtgctaaagtg 450  Q
    |||||||||| || ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||    
T  10773314 aacaaatcaaaatgggatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtg 10773247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 550800 - 550867
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||| |||||| |||| ||||| ||||||    
T  550800 ataaatggagtttgcaatttggagaaagatatatacaaaaaatagatggtggatcctatcattaagtg 550867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 463
Target Start/End: Complemental strand, 30045323 - 30045242
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaa 463  Q
    ||||||||||| || ||||||||||||||||| ||| |||| |||||| ||||||| ||||| ||||||| ||| |||||||    
T  30045323 gaacaaatcaaaatgggatatattgctcaaaagaaaggtgaatcaccctgcacaaggtgtgcaaaagtgaagaaacacctaa 30045242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 460
Target Start/End: Complemental strand, 7937536 - 7937458
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacc 460  Q
    ||||||||||| || | || |||||||||||  || |||||||| ||| ||||||| ||||||||||||||||||||||    
T  7937536 gaacaaatcaaaatggaatctattgctcaaaggcagagtgattccccctgcacaaggtgtgctaaagtgatgaatcacc 7937458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 459
Target Start/End: Complemental strand, 30188632 - 30188555
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaaag-tgattcaccccgcacaagttgtgctaa-agtgatgaatcac 459  Q
    ||||||| || |||| ||||||||||||||  |||| ||||||||||||||| || |||||||| |||||||||||||    
T  30188632 aacaaataaaaatagaatatattgctcaaacgaaaggtgattcaccccgcactagatgtgctaagagtgatgaatcac 30188555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 447
Target Start/End: Complemental strand, 29685704 - 29685640
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaa 447  Q
    |||||||||| |||| ||||||||||||||| || |||||||||||| ||||||| ||| |||||    
T  29685704 aacaaatcaaaatagaatatattgctcaaaataatagtgattcaccctgcacaagatgtactaaa 29685640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 460
Target Start/End: Original strand, 25280388 - 25280466
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaagtgatgaatcacc 460  Q
    ||||||||||| || | ||||||| ||||||| |  | |||||||||||||||||| |||||||  |||||||||||||    
T  25280388 gaacaaatcaaaatggaatatattactcaaaagaggaatgattcaccccgcacaagatgtgctagcgtgatgaatcacc 25280466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 566757 - 566798
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaaa 200  Q
    ||||||||||||| ||||||||||||||||| | ||||||||    
T  566757 ataaatggagtttgcaatttggagagagatagatacaaaaaa 566798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 2229951 - 2229902
Alignment:
Q  284 ctctccaaataaaagaaatgaagaaaaacattaatgaagaggatcctaac 333  Q
    |||||||||| ||||||||  ||||| |||| ||||||||||||||||||    
T  2229951 ctctccaaattaaagaaatagagaaacacataaatgaagaggatcctaac 2229902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 37323951 - 37323996
Alignment:
Q  154 tcaagataaatggagtttacaatttggagagagatatacacaaaaa 199  Q
    |||| ||||||||||  ||||||||||||||||||| |||||||||    
T  37323951 tcaaaataaatggaggatacaatttggagagagatagacacaaaaa 37323996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 24754749 - 24754681
Alignment:
Q  159 ataaatggagttt-acaatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    ||||||||||||| |||| ||||||||||||| ||||| ||||| |||||||  || || |||||||||    
T  24754749 ataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtg 24754681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 24763746 - 24763678
Alignment:
Q  159 ataaatggagttt-acaatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    ||||||||||||| |||| ||||||||||||| ||||| ||||| |||||||  || || |||||||||    
T  24763746 ataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtg 24763678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 17712672 - 17712772
Alignment:
Q  383 gaacaaatcaatataggatatattgctca-aaacaaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccac 481  Q
    ||||||||||| || | ||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||| |||||    
T  17712672 gaacaaatcaaaatggaatatattactcagaaacagagtgattcaccccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacaccac 17712771  T
Q  482 a 482  Q
    |    
T  17712772 a 17712772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 457
Target Start/End: Original strand, 135820 - 135895
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaagtgattcaccccgcacaagttgtgctaa-agtgatgaatc 457  Q
    ||||||||||| || | ||||||||||||||  |||||||||||||||| ||||| |||||||| |||||||||||    
T  135820 gaacaaatcaaaatggaatatattgctcaaacgaaagtgattcaccccgtacaaggtgtgctaagagtgatgaatc 135895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 383 - 460
Target Start/End: Complemental strand, 26893424 - 26893346
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaag-tgattcaccccgcacaagttgtgctaaagtgatgaatcacc 460  Q
    ||||||||||| || | || |||||||||||| |||| | |||||||| ||||||| ||||||||||||||||||||||    
T  26893424 gaacaaatcaaaatggaatgtattgctcaaaagaaaggtaattcaccctgcacaaggtgtgctaaagtgatgaatcacc 26893346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 475
Target Start/End: Original strand, 42396713 - 42396789
Alignment:
Q  400 atatattgctcaaaacaaag-tgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaa 475  Q
    ||||||||||||||| |||| ||||| |||||||||||| | ||||||||||||||| |||| ||| | ||||||||    
T  42396713 atatattgctcaaaagaaaggtgatttaccccgcacaaggtatgctaaagtgatgaaacacccaatgtctgttacaa 42396789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 13159698 - 13159792
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgct-aaagtgatgaatcacctaatatttgttacaa 475  Q
    ||||||||||| || | ||||||||||||||  ||| ||||||||||||||||||  |||||| |||||| ||||||||  ||||| ||||||||    
T  13159698 gaacaaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaaagtgtgctaaaagtggtgaatcacaaaatatatgttacaa 13159792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 33841789 - 33841831
Alignment:
Q  160 taaatggagtttacaatttggagagagatatacacaaaaaatt 202  Q
    |||||||||| ||||||||||||||||||| ||||||||||||    
T  33841789 taaatggagtatacaatttggagagagatagacacaaaaaatt 33841831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 451
Target Start/End: Original strand, 14453917 - 14453986
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgctaaagtga 451  Q
    ||||||||||| || ||||||||||||||||| ||| |||| |||||| ||||||| ||||| |||||||    
T  14453917 gaacaaatcaaaatgggatatattgctcaaaagaaaggtgaatcaccctgcacaaggtgtgcaaaagtga 14453986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 447
Target Start/End: Complemental strand, 44546706 - 44546641
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgctaaa 447  Q
    ||||||||||| || | ||||||||||||||  ||| ||||||||||||||||||| |||||||||    
T  44546706 gaacaaatcaaaatggaatatattgctcaaaggaaaagtgattcaccccgcacaaggtgtgctaaa 44546641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 464
Target Start/End: Complemental strand, 52762990 - 52762925
Alignment:
Q  400 atatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaat 464  Q
    |||||||||||||||  | ||||||||||| || ||||| |||| |||||||||||||||||||||    
T  52762990 atatattgctcaaaagtatagtgattcacctcgtacaaggtgtgttaaagtgatgaatcacctaat 52762925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 13317639 - 13317739
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaa-aacaaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccac 481  Q
    |||||||| || || | ||||||| ||||| |||| ||||||||||||| |||||| |||| |||| ||||||||   ||||||| |||||||| |||||    
T  13317639 gaacaaattaaaatggaatatattactcaagaacagagtgattcaccccacacaaggtgtgttaaaatgatgaattcgctaatatctgttacaacaccac 13317738  T
Q  482 a 482  Q
    |    
T  13317739 a 13317739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 23610734 - 23610666
Alignment:
Q  159 ataaatggagttta-caatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    |||||||||||||  ||| ||||||||||||| ||||||||||| |||||| | ||||| |||||||||    
T  23610734 ataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtg 23610666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 459
Target Start/End: Complemental strand, 39868402 - 39868326
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaagtgatgaatcac 459  Q
    |||||||||| || | |||||||||| |||| || ||||| |||||||||||||| |||||||||  ||||||||||    
T  39868402 aacaaatcaaaatggaatatattgctgaaaagaagagtgactcaccccgcacaaggtgtgctaaaacgatgaatcac 39868326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 56558371 - 56558303
Alignment:
Q  159 ataaatggagttta-caatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    |||||||||||||  ||| ||||||||||||| ||||||||||| |||||| | || ||||||||||||    
T  56558371 ataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctatcactaagtg 56558303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 437
Target Start/End: Complemental strand, 21142003 - 21141948
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaaca-aagtgattcaccccgcacaag 437  Q
    ||||||||||| |||| |||||||||||||| ||  ||||||||||||||||||||    
T  21142003 gaacaaatcaaaatagaatatattgctcaaaccaggagtgattcaccccgcacaag 21141948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 475
Target Start/End: Complemental strand, 28709205 - 28709150
Alignment:
Q  420 tgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaa 475  Q
    |||||||||||||||||| |||||||| ||||||||||| | ||||| || |||||    
T  28709205 tgattcaccccgcacaagatgtgctaacgtgatgaatcatccaatatctgatacaa 28709150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 459
Target Start/End: Complemental strand, 1463412 - 1463335
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgct-aaagtgatgaatcac 459  Q
    |||||||||| || | ||| ||||||||||  |||||| |||||||||||| ||| |||||| |||||||||||||||    
T  1463412 aacaaatcaaaatggtataaattgctcaaaggcaaagtcattcaccccgcataaggtgtgctaaaagtgatgaatcac 1463335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 12241515 - 12241564
Alignment:
Q  284 ctctccaaataaaagaaatgaagaaaaacattaatgaagaggatcctaac 333  Q
    ||||||||||  |||||||| ||||| |||| ||||||||||||||||||    
T  12241515 ctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaac 12241564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 447
Target Start/End: Complemental strand, 17186348 - 17186283
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaa 447  Q
    ||||||||||| || | ||||||||||||||| || ||||||||| |||||||||| | |||||||    
T  17186348 gaacaaatcaaaatggaatatattgctcaaaagaagagtgattcatcccgcacaaggtatgctaaa 17186283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 475
Target Start/End: Original strand, 46191195 - 46191288
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgct-aaagtgatgaatcacctaatatttgttacaa 475  Q
    |||||||||| || | ||||||||||||||  ||| ||||||||||||||||||  |||||| ||| |||||| ||||  ||||| ||||||||    
T  46191195 aacaaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaatgtgtgctaaaaatgatgactcactgaatatctgttacaa 46191288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 3952153 - 3952241
Alignment:
Q  159 ataaatggagttta-caatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtgattcttaccatcatcaatta 246  Q
    |||||||||||||  ||| ||||||||||||| ||| ||||||| |||||| | || || |||||||||  ||| |||||||| |||||    
T  3952153 ataaatggagtttggcaagttggagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtctcaccatcattaatta 3952241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 19901901 - 19901969
Alignment:
Q  159 ataaatggagttta-caatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    |||||||||||||  ||| ||||||||||||| ||||||||||| |||||| | || || |||||||||    
T  19901901 ataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtg 19901969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 34778513 - 34778445
Alignment:
Q  159 ataaatggagttta-caatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    |||||||||||||  ||| ||| ||||||||| ||||||||||| |||||| |||| || |||||||||    
T  34778513 ataaatggagttttgcaagttgaagagagatagacacaaaaaatagatggtggatcctaccactaagtg 34778445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 55284841 - 55284905
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaa 447  Q
    |||||||||| |||  |||||||||| |||| || |||||||||||||||| ||| |||||||||    
T  55284841 aacaaatcaaaataaaatatattgctgaaaataatagtgattcaccccgcataaggtgtgctaaa 55284905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 384 - 482
Target Start/End: Complemental strand, 1585547 - 1585448
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccaca 482  Q
    |||||||||| || | ||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||  ||||||| |||||||| ||||||    
T  1585547 aacaaatcaaaattgaatatattgctcaaaagcagagtgattcaccccgtacaaggtgtgctaaagtgatgaatcctctaatatatgttacaacaccaca 1585448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 383 - 484
Target Start/End: Original strand, 17945874 - 17945976
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccac 481  Q
    ||||||||||| || | ||||||| ||||||| || |||||||||||||||||||| ||||||||| |||||||||  ||||||| |||||||| |||||    
T  17945874 gaacaaatcaaaatggaatatattactcaaaaacagagtgattcaccccgcacaaggtgtgctaaaatgatgaatcctctaatatctgttacaacaccac 17945973  T
Q  482 aac 484  Q
    |||    
T  17945974 aac 17945976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 383 - 484
Target Start/End: Original strand, 17696033 - 17696135
Alignment:
Q  383 gaacaaatcaatataggatatattgctc-aaaacaaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccac 481  Q
    ||||||||||| |||| ||||||| ||| |||||| ||||||||| |||||||||| ||||||||| ||||||||   ||||||| |||||||| |||||    
T  17696033 gaacaaatcaaaatagaatatattactcaaaaacagagtgattcatcccgcacaaggtgtgctaaaatgatgaattctctaatatctgttacaacaccac 17696132  T
Q  482 aac 484  Q
    |||    
T  17696133 aac 17696135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 484
Target Start/End: Complemental strand, 15504938 - 15504872
Alignment:
Q  418 agtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccacaac 484  Q
    |||||||||||||||||||| |||| |||| |||||||||  ||||||| |||||||||||||||||    
T  15504938 agtgattcaccccgcacaaggtgtgttaaaatgatgaatcttctaatatctgttacaataccacaac 15504872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 384 - 463
Target Start/End: Original strand, 13390352 - 13390432
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaaca-aagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaa 463  Q
    |||||||||| || | |||||| |||||||| | ||||||||||||||||||||| |||||||| |||||||| |||||||    
T  13390352 aacaaatcaaaatggaatatatagctcaaaagagaagtgattcaccccgcacaagatgtgctaacgtgatgaaccacctaa 13390432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 451
Target Start/End: Complemental strand, 21825285 - 21825215
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaa--gtgattcaccccgcacaagttgtgctaaagtga 451  Q
    ||||||||||| || | ||||||||||||||| |||  ||||||||||||||||||| |||||||||||||    
T  21825285 gaacaaatcaaaatggaatatattgctcaaaagaaaaggtgattcaccccgcacaaggtgtgctaaagtga 21825215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 32793465 - 32793418
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaaattgatg 206  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  32793465 ataaatggagtttacaatttagagagagatatacacaaaaaatagatg 32793418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 26397286 - 26397350
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaa 447  Q
    |||||||||| || | ||||||||||||||| || |||||||||||||||||||| |||||||||    
T  26397286 aacaaatcaaaatggaatatattgctcaaaagaagagtgattcaccccgcacaaggtgtgctaaa 26397350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 474
Target Start/End: Complemental strand, 24251379 - 24251286
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgct-aaagtgatgaatcacctaatatttgttaca 474  Q
    ||||||| ||| |||  |||||||| |||||| | ||||||||||||||||||||| |||| | |||||||||||||||| ||| | |||||||    
T  24251379 gaacaaaccaaaataaaatatattgttcaaaagctaagtgattcaccccgcacaaggtgtgttaaaagtgatgaatcacccaatgtatgttaca 24251286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 459
Target Start/End: Original strand, 40632647 - 40632724
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaagtgatgaatcac 459  Q
    ||||||||||| ||   ||||||||||||||| || |||||||||||||||| ||| |||||||||  ||||||||||    
T  40632647 gaacaaatcaaaatgaaatatattgctcaaaagaagagtgattcaccccgcataaggtgtgctaaaacgatgaatcac 40632724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 3057138 - 3057206
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtga 227  Q
    ||||||||| ||| ||||||||| ||||||| ||||||||||| |||||| |||| || || |||||||    
T  3057138 ataaatggaatttgcaatttggatagagataaacacaaaaaatagatggtggatcctaccattaagtga 3057206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 11775885 - 11775817
Alignment:
Q  159 ataaatggagttta-caatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    |||||||||||||  ||| ||||||||||||| ||||||||||| |||||| |||| || |||||||||    
T  11775885 ataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtg 11775817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 18653458 - 18653410
Alignment:
Q  153 gtcaagataaatggagtttacaatttggagagagatatacacaaaaaat 201  Q
    ||||| ||||||||||||| ||||||| ||||||||| |||||||||||    
T  18653458 gtcaaaataaatggagtttgcaatttgaagagagatagacacaaaaaat 18653410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 23264111 - 23264179
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaagtga 451  Q
    |||||||||| || ||||||||||||||| | |  |||| ||||||||||||||| |||||||||||||    
T  23264111 aacaaatcaaaatgggatatattgctcaatagagtagtgtttcaccccgcacaaggtgtgctaaagtga 23264179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 37266823 - 37266755
Alignment:
Q  159 ataaatggagttta-caatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    |||||||||||||  ||| ||||||||||||| ||||||||||| |||||| | ||||| |||||||||    
T  37266823 ataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtg 37266755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 7123947 - 7124009
Alignment:
Q  400 atatattgctcaaaa-caaagtgattcaccccgcacaagttgtgct-aaagtgatgaatcacc 460  Q
    ||||||| ||||||| |||||||||||| |||||| ||| |||||| ||||||||||||||||    
T  7123947 atatatttctcaaaagcaaagtgattcaacccgcataaggtgtgctaaaagtgatgaatcacc 7124009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 18149377 - 18149438
Alignment:
Q  400 atatattgctcaaaacaaag-tgattcaccccgcacaagttgtgctaaagtgatgaatcacc 460  Q
    |||||||||||||||  ||| || ||||||||||||||| |||||||||||| |||| ||||    
T  18149377 atatattgctcaaaagtaaggtggttcaccccgcacaaggtgtgctaaagtggtgaaacacc 18149438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 475
Target Start/End: Original strand, 21269879 - 21269972
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgct-aaagtgatgaatcacctaatatttgttacaa 475  Q
    |||||||||| || | ||||||| |||||| |||| || |||||||||||||||| |||||| |||||| ||||| ||  ||||| ||||||||    
T  21269879 aacaaatcaaaatggtatatattactcaaaccaaaagtaattcaccccgcacaaggtgtgctaaaagtggtgaattactcaatatatgttacaa 21269972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 475
Target Start/End: Original strand, 21271893 - 21271986
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgct-aaagtgatgaatcacctaatatttgttacaa 475  Q
    |||||||||| || | ||||||| |||||| |||| || |||||||||||||||| |||||| |||||| ||||| ||  ||||| ||||||||    
T  21271893 aacaaatcaaaatggtatatattactcaaaccaaaagtaattcaccccgcacaaggtgtgctaaaagtggtgaattactcaatatatgttacaa 21271986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 459
Target Start/End: Complemental strand, 37268410 - 37268333
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgct-aaagtgatgaatcac 459  Q
    |||||||||| || | ||||||||||||||  ||| ||||||||||||| ||||| |||||| ||||||| |||||||    
T  37268410 aacaaatcaaaatggaatatattgctcaaaggaaaagtgattcaccccgtacaaggtgtgctaaaagtgacgaatcac 37268333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 456
Target Start/End: Complemental strand, 38099646 - 38099573
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaaagtgattcaccccgcacaagttgtgctaa-agtgatgaat 456  Q
    |||||||||| || | ||||||| ||||||  ||| |||||||||||||||||| |||| ||| ||||||||||    
T  38099646 aacaaatcaaaatggaatatattactcaaacaaaaatgattcaccccgcacaaggtgtgataagagtgatgaat 38099573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 451
Target Start/End: Complemental strand, 41211642 - 41211573
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgctaaagtga 451  Q
    ||||||||||| || ||||||||| ||||||| ||| |||| |||||| ||||||| ||||| |||||||    
T  41211642 gaacaaatcaaaatgggatatattactcaaaagaaaggtgaatcaccctgcacaaggtgtgcaaaagtga 41211573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 4895718 - 4895786
Alignment:
Q  159 ataaatggagttta-caatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    |||||||||||||  ||| ||||||||||||| ||||||||||| |||||| | || || |||||||||    
T  4895718 ataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtg 4895786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 455
Target Start/End: Complemental strand, 16120045 - 16120013
Alignment:
Q  423 ttcaccccgcacaagttgtgctaaagtgatgaa 455  Q
    ||||||||||||||| |||||||||||||||||    
T  16120045 ttcaccccgcacaaggtgtgctaaagtgatgaa 16120013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 447
Target Start/End: Complemental strand, 23257242 - 23257178
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgctaaa 447  Q
    |||||||||| || | |||||||| |||||  ||| ||||||||||||||||||| |||||||||    
T  23257242 aacaaatcaaaatggaatatattgttcaaacgaaaagtgattcaccccgcacaaggtgtgctaaa 23257178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 34827284 - 34827216
Alignment:
Q  159 ataaatggagtt-tacaatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    |||||||||||| | ||| ||||||||||||| ||| ||||||| |||||| |||| || |||||||||    
T  34827284 ataaatggagttatgcaagttggagagagatagacaaaaaaaatagatggtggatcctaccactaagtg 34827216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 35660592 - 35660660
Alignment:
Q  159 ataaatggagttta-caatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    |||||||||||||  ||| ||||||||||||| ||||||||||| |||||| | || || |||||||||    
T  35660592 ataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtg 35660660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 37414637 - 37414705
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgctaaagtga 451  Q
    ||||||| || || ||||||||||||||||| ||| |||| |||||| ||||||| ||||| |||||||    
T  37414637 aacaaattaaaatgggatatattgctcaaaagaaaggtgaatcaccctgcacaaggtgtgcaaaagtga 37414705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 384 - 482
Target Start/End: Original strand, 16423196 - 16423295
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccaca 482  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||  |||| ||||||| ||| |||||| |||||||| ||||||    
T  16423196 aacaaatcaaaataggatatattgctcaaaatcaaagcgattcaccccgcacaaggtgttttaaactgatgaaacacgtaatatctgttacaacaccaca 16423295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 383 - 451
Target Start/End: Original strand, 7637637 - 7637706
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaag-tgattcaccccgcacaagttgtgctaaagtga 451  Q
    ||||||||||| || ||||||||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  7637637 gaacaaatcaaaatgggatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtga 7637706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 475
Target Start/End: Complemental strand, 10349614 - 10349521
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaac-aaagtgattcaccccgcacaagttgtgct-aaagtgatgaatcacctaatatttgttacaa 475  Q
    |||||||||| || | ||||||||||||||   |||||||||||||| ||||||| |||||| |||||||||||||||  ||||| ||||||||    
T  10349614 aacaaatcaaaatggaatatattgctcaaactgaaagtgattcaccctgcacaaggtgtgctaaaagtgatgaatcacaaaatatctgttacaa 10349521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 24977331 - 24977264
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    |||||||  ||||||||||| |||||||||| ||||||||||| |||||| |||| || |||||||||    
T  24977331 ataaatgatgtttacaatttagagagagatagacacaaaaaatagatggtggatcctaccactaagtg 24977264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 447
Target Start/End: Original strand, 20819602 - 20819667
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgctaaa 447  Q
    ||||||||||| || | ||||||||||||||| ||| ||||||||||| ||||||| |||||||||    
T  20819602 gaacaaatcaaaatggaatatattgctcaaaagaaaagtgattcacccagcacaaggtgtgctaaa 20819667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 455
Target Start/End: Complemental strand, 39581499 - 39581426
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgct-aaagtgatgaa 455  Q
    |||||||||| ||||||||||||| |||||  || |||||||||||||||||||| | |||| |||||||||||    
T  39581499 aacaaatcaaaataggatatattgttcaaacgaatagtgattcaccccgcacaagatatgctaaaagtgatgaa 39581426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 40328244 - 40328195
Alignment:
Q  284 ctctccaaataaaagaaatgaagaaaaacattaatgaagaggatcctaac 333  Q
    |||||||||| ||||||||||||||| |||| ||||||||||||| ||||    
T  40328244 ctctccaaattaaagaaatgaagaaacacataaatgaagaggatcttaac 40328195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 451
Target Start/End: Complemental strand, 44955779 - 44955710
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgctaaagtga 451  Q
    ||||||||||| || ||||||||||||||||| ||| |||| |||||| ||||||| ||||| |||||||    
T  44955779 gaacaaatcaaaatgggatatattgctcaaaaaaaaggtgaatcaccctgcacaaggtgtgcaaaagtga 44955710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 458
Target Start/End: Original strand, 12396334 - 12396408
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaagtgattcaccccgcacaagttgtgctaa-agtgatgaatca 458  Q
    ||||||||||| |||| |||||| |||||||  ||||||||||| |||||||||| |||||||| ||||||||||||    
T  12396334 gaacaaatcaagatagaatatat-gctcaaacgaaagtgattca-cccgcacaaggtgtgctaagagtgatgaatca 12396408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 50294046 - 50294134
Alignment:
Q  159 ataaatggag-tttacaatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtgattcttaccatcatcaatta 246  Q
    |||||||||| ||| ||| ||||||||||||| ||||||||||| |||||| | || || |||||||||  || ||||||||| |||||    
T  50294046 ataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtggatcctaccatcattaatta 50294134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 30210695 - 30210742
Alignment:
Q  161 aaatggagtttacaatttggagagagatatacacaaaaaattgatggt 208  Q
    |||||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  30210695 aaatggagtttacagtttagagagagatagacaaaaaaaattgatggt 30210742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 447
Target Start/End: Original strand, 24509316 - 24509380
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaa 447  Q
    ||||||||||| || | ||||||||||||||| || ||||||||| |||||||||| |||||||||    
T  24509316 gaacaaatcaaaatggaatatattgctcaaaagaagagtgattca-cccgcacaaggtgtgctaaa 24509380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 475
Target Start/End: Complemental strand, 34505272 - 34505219
Alignment:
Q  422 attcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaa 475  Q
    |||||||||||| ||| ||||||||| || ||||||||||||||| | ||||||    
T  34505272 attcaccccgcataaggtgtgctaaaatggtgaatcacctaatatctattacaa 34505219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 411 - 484
Target Start/End: Original strand, 42217 - 42290
Alignment:
Q  411 aaaacaaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccacaac 484  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||  ||||||| |||||||| ||||||||    
T  42217 aaaacaaagtgattcaccccgcacaagatgtgctaaaatgatgaatcctctaatatctgttacaacaccacaac 42290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 384 - 484
Target Start/End: Complemental strand, 11060 - 10959
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccaca 482  Q
    |||||||||| || | ||||||| |||||||  | |||||||||||||||||||| |||| ||||||||||||||  ||||||| |||||||| ||||||    
T  11060 aacaaatcaaaatggaatatattactcaaaaagagagtgattcaccccgcacaaggtgtgttaaagtgatgaatcctctaatatctgttacaacaccaca 10961  T
Q  483 ac 484  Q
    ||    
T  10960 ac 10959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 484
Target Start/End: Original strand, 2854115 - 2854213
Alignment:
Q  387 aaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccacaac 484  Q
    ||||||| || | ||||||| ||||||| || |||||||||||||||||||| ||||||||| |||||||||  ||||||  |||||||| ||||||||    
T  2854115 aaatcaaaatggaatatattactcaaaaacagagtgattcaccccgcacaaggtgtgctaaaatgatgaatcctctaatacctgttacaacaccacaac 2854213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 451
Target Start/End: Complemental strand, 18489814 - 18489745
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaag-tgattcaccccgcacaagttgtgctaaagtga 451  Q
    ||||||||||| || | ||||||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  18489814 gaacaaatcaaaatggaatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtga 18489745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 451
Target Start/End: Original strand, 16477625 - 16477695
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaa--gtgattcaccccgcacaagttgtgctaaagtga 451  Q
    ||||||||||| || | ||||||||||||||| |||  ||||||||||||||||||| |||||||||||||    
T  16477625 gaacaaatcaaaatggaatatattgctcaaaagaaaaggtgattcaccccgcacaaggtgtgctaaagtga 16477695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 460
Target Start/End: Original strand, 31848075 - 31848131
Alignment:
Q  406 tgctcaaaa-caaagtgattcaccccgcacaagttgtgct-aaagtgatgaatcacc 460  Q
    ||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  31848075 tgctcaaaagcaaagtgattcaccccgcacaaggtgtgctaaaagtgatgaatcacc 31848131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 4804540 - 4804472
Alignment:
Q  159 ataaatggagttt-acaatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||| |||||| | || || |||||||||    
T  4804540 ataaatggagttttacaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtg 4804472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 460
Target Start/End: Original strand, 4103082 - 4103161
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaac-aaagtgattcaccccgcacaagttgtgct-aaagtgatgaatcacc 460  Q
    |||||| |||| || | |||||||||||||||  ||||||||||||||||||||||  ||||| |||| |||||||||||    
T  4103082 gaacaagtcaaaatggaatatattgctcaaaatgaaagtgattcaccccgcacaaggcgtgctaaaagcgatgaatcacc 4103161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 453
Target Start/End: Original strand, 31794672 - 31794743
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatg 453  Q
    ||||||||||| || | ||||||| ||||||| || ||| |||||||||||||||  |||||||||||||||    
T  31794672 gaacaaatcaaaatggaatatattactcaaaaacagagtaattcaccccgcacaaagtgtgctaaagtgatg 31794743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 1516190 - 1516244
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaaattgatggtagatc 213  Q
    ||||||||||||| ||||||||||||||||  | ||||||||| |||||| ||||    
T  1516190 ataaatggagtttgcaatttggagagagatggatacaaaaaatagatggtggatc 1516244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 1518279 - 1518333
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaaattgatggtagatc 213  Q
    ||||||||||||| ||||||||||||||||  | ||||||||| |||||| ||||    
T  1518279 ataaatggagtttgcaatttggagagagatggatacaaaaaatagatggtggatc 1518333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 459
Target Start/End: Original strand, 5675490 - 5675568
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaaca-aagtgattcaccccgcacaagttgtgct-aaagtgatgaatcac 459  Q
    ||||||||||| || | ||||||||| ||||| | ||||||||||||||||||||| ||| || |||| ||||||||||    
T  5675490 gaacaaatcaaaatggaatatattgcacaaaagagaagtgattcaccccgcacaaggtgtactaaaagcgatgaatcac 5675568  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 20210348 - 20210255
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaa 475  Q
    ||||||||||| |||| ||||||| ||||||| |  ||   ||||||||||||||| |||||||||||| |||| || | || |||||||||||    
T  20210348 gaacaaatcaaaatagaatatattactcaaaataggagaacttcaccccgcacaagatgtgctaaagtggtgaagcatccaaaatttgttacaa 20210255  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 22104371 - 22104278
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaa 475  Q
    ||||||||||| |||| ||||||| ||||||| |  ||   ||||||||||||||| |||||||||||| |||| || | || |||||||||||    
T  22104371 gaacaaatcaaaatagaatatattactcaaaataggagaacttcaccccgcacaagatgtgctaaagtggtgaagcatccaaaatttgttacaa 22104278  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 30460915 - 30460875
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaa 199  Q
    ||||||||||||| ||||||||||| ||||| |||||||||    
T  30460915 ataaatggagtttgcaatttggagaaagatagacacaaaaa 30460875  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 33006689 - 33006787
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaac-aaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaataccac 481  Q
    |||||||||| |||  ||||||| |||||||  ||||||||||||| || ||||| ||| |||||||||||||||||||||||| | |||||| |||||    
T  33006689 aacaaatcaaaataaaatatattactcaaaagtaaagtgattcacctcgtacaaggtgtcctaaagtgatgaatcacctaatatctcttacaacaccac 33006787  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 480
Target Start/End: Complemental strand, 10005324 - 10005227
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaa-caaagtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaatacca 480  Q
    |||||||||||||   |||||||| |||||  || ||| |||||||||||||||| |||||||||||||||||||  ||||||| |||||||| ||||    
T  10005324 aacaaatcaatatgaaatatattgttcaaaggcagagttattcaccccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacacca 10005227  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 384 - 459
Target Start/End: Complemental strand, 3376211 - 3376135
Alignment:
Q  384 aacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaagtgatgaatcac 459  Q
    |||||||||| |||| ||||||| ||||||| || |||||||||||||||||||| |||||||||  ||||||||||    
T  3376211 aacaaatcaaaatagaatatattactcaaaagaagagtgattcaccccgcacaaggtgtgctaaaacgatgaatcac 3376135  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 39994750 - 39994657
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaagtgatgaatcacctaatatttgttacaa 475  Q
    ||||||||||| || | ||||||| |||||||  | |||||||||||||| ||||| ||||||||| |||||||||  ||||||| ||||||||    
T  39994750 gaacaaatcaaaatggaatatattactcaaaaatatagtgattcaccccgtacaaggtgtgctaaaatgatgaatcctctaatatctgttacaa 39994657  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 2063445 - 2063396
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaaattgatggt 208  Q
    |||||| |||||| ||||||||||||||||| ||||||||||| ||||||    
T  2063445 ataaatagagtttgcaatttggagagagatagacacaaaaaatagatggt 2063396  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 455
Target Start/End: Complemental strand, 26438409 - 26438353
Alignment:
Q  400 atatattgctcaaaacaaag-tgattcaccccgcacaagttgtgctaaagtgatgaa 455  Q
    |||||||| |||||| |||| |||||||||| ||||||| |||||||||||||||||    
T  26438409 atatattgttcaaaagaaaggtgattcaccctgcacaaggtgtgctaaagtgatgaa 26438353  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 35316917 - 35316849
Alignment:
Q  159 ataaatggagttta-caatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    |||||||||||||  ||| ||||||||||||| ||||||||||| |||||| |||| || |||||||||    
T  35316917 ataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtg 35316849  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 460
Target Start/End: Complemental strand, 11123705 - 11123667
Alignment:
Q  422 attcaccccgcacaagttgtgctaaagtgatgaatcacc 460  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  11123705 attcaccccgcacaaggtgtgctaaaatgatgaatcacc 11123667  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 459
Target Start/End: Original strand, 45701187 - 45701265
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgct-aaagtgatgaatcac 459  Q
    ||||||||||| || | |||||||||| |||| ||| ||||||||||| ||||||| |||||| |||| ||||||||||    
T  45701187 gaacaaatcaaaatggaatatattgcttaaaagaaaagtgattcacccagcacaaggtgtgctaaaagcgatgaatcac 45701265  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 10877670 - 10877621
Alignment:
Q  284 ctctccaaataaaagaaatgaagaaaaacattaatgaagaggatcctaac 333  Q
    ||||||||||  |||||||| ||||| |||| ||||||||||||||||||    
T  10877670 ctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaac 10877621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 11864966 - 11864913
Alignment:
Q  154 tcaagataaatggagttt-acaatttggagagagatatacacaaaaaattgatg 206  Q
    |||| ||||||||||||| |||| ||||||||||||| ||||||||||| ||||    
T  11864966 tcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagatg 11864913  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 41435198 - 41435255
Alignment:
Q  170 ttacaatttggagagagatatacacaaaaaattga-tggtagatcatatcactaagtg 226  Q
    |||||||||||||||||||| |||||||||| | | |||| |||| ||||||||||||    
T  41435198 ttacaatttggagagagatagacacaaaaaaataagtggtggatcctatcactaagtg 41435255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 42184154 - 42184106
Alignment:
Q  400 atatattgctcaaaacaa-agtgattcaccccgcacaagttgtgctaaa 447  Q
    ||||||| |||||| ||| |||||||||||||||||||| |||||||||    
T  42184154 atatattactcaaaccaacagtgattcaccccgcacaagatgtgctaaa 42184106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 458
Target Start/End: Original strand, 10014 - 10091
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaag--tgattcaccccgcacaagttgtgctaaagtgatgaatca 458  Q
    ||||||||||| || | ||||||| ||||||| | ||  |||||||||||||||||| ||||||||| ||||||||||    
T  10014 gaacaaatcaaaatggaatatattactcaaaaaacagaatgattcaccccgcacaaggtgtgctaaaatgatgaatca 10091  T

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Target: scaffold0153 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 451
Target Start/End: Complemental strand, 25016 - 24947
Alignment:
Q  383 gaacaaatcaatataggatatattgctcaaaacaaa-gtgattcaccccgcacaagttgtgctaaagtga 451  Q
    ||||||||||| || ||||||||||||||||| ||| |||| || ||| ||||||| ||||| |||||||    
T  25016 gaacaaatcaaaatgggatatattgctcaaaagaaaggtgaatcgccctgcacaaggtgtgcaaaagtga 24947  T

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Target: scaffold0126 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 22426 - 22494
Alignment:
Q  159 ataaatggagtttacaatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtga 227  Q
    ||||||||||||| ||||||  | ||||||| ||||||||||| ||| || |||| || ||||||||||    
T  22426 ataaatggagtttgcaatttacaaagagatagacacaaaaaatagatagtggatcctaccactaagtga 22494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 208155 - 208087
Alignment:
Q  159 ataaatggagttta-caatttggagagagatatacacaaaaaattgatggtagatcatatcactaagtg 226  Q
    |||||||||||||  ||| ||||||||||||| ||||||||||| |||||| | || || |||||||||    
T  208155 ataaatggagttttgcaagttggagagagataaacacaaaaaatagatggtgggtcctaccactaagtg 208087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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