View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_90 (Length: 340)

Name: NF6866A_low_90
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_90
NF6866A_low_90
[»] chr2 (25 HSPs)
chr2 (1-334)||(39215561-39215894)
chr2 (1-331)||(39161771-39162104)
chr2 (1-331)||(39207090-39207423)
chr2 (3-136)||(39370039-39370172)
chr2 (16-329)||(39388918-39389236)
chr2 (161-328)||(39192266-39192436)
chr2 (161-328)||(39197946-39198116)
chr2 (1-116)||(39192439-39192554)
chr2 (1-116)||(39198119-39198234)
chr2 (161-263)||(39222932-39223037)
chr2 (194-331)||(39370254-39370394)
chr2 (3-112)||(39468270-39468379)
chr2 (1-136)||(39414761-39414896)
chr2 (2-115)||(39473409-39473522)
chr2 (1-85)||(39137811-39137895)
chr2 (1-116)||(39222814-39222929)
chr2 (190-327)||(39381275-39381412)
chr2 (3-112)||(39397852-39397961)
chr2 (40-115)||(39459220-39459295)
chr2 (38-116)||(39381510-39381588)
chr2 (21-115)||(39421832-39421926)
chr2 (190-235)||(39421688-39421733)
chr2 (190-227)||(39468448-39468485)
chr2 (269-322)||(39223101-39223154)
chr2 (183-227)||(39459387-39459431)
[»] chr6 (2 HSPs)
chr6 (3-112)||(16113230-16113339)
chr6 (190-227)||(16113441-16113478)
[»] chr7 (2 HSPs)
chr7 (19-85)||(19807779-19807845)
chr7 (191-287)||(19807963-19808059)
[»] chr5 (2 HSPs)
chr5 (190-331)||(33561135-33561281)
chr5 (195-235)||(17059602-17059642)
[»] chr8 (1 HSPs)
chr8 (206-321)||(45342187-45342305)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 39215561 - 39215894
Alignment:
Q  1 agaagcaatttgagggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215561 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 39215660  T
Q  101 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215661 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaaa 39215760  T
Q  201 tgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215761 tgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaa 39215860  T
Q  301 tatttttaatcatgttaatgttttatgtctttgt 334  Q
    ||||||||||||||||||||||||||||||||||    
T  39215861 tatttttaatcatgttaatgttttatgtctttgt 39215894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 39161771 - 39162104
Alignment:
Q  1 agaagcaatttgagggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 100  Q
    |||| |||||||| ||||||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| |||    
T  39161771 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39161870  T
Q  101 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaaga---aacacaatcgggt 197  Q
    |||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||||| ||   || | |||| |||    
T  39161871 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39161970  T
Q  198 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 297  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39161971 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39162070  T
Q  298 aaatatttttaatcatgttaatgttttatgtctt 331  Q
    | |  |||||| ||||||||||||| ||||||||    
T  39162071 acacgtttttactcatgttaatgttgtatgtctt 39162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 39207423 - 39207090
Alignment:
Q  1 agaagcaatttgagggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 100  Q
    |||| |||||||| ||||||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| |||    
T  39207423 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39207324  T
Q  101 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaaga---aacacaatcgggt 197  Q
    |||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||||| ||   || | |||| |||    
T  39207323 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39207224  T
Q  198 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 297  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39207223 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39207124  T
Q  298 aaatatttttaatcatgttaatgttttatgtctt 331  Q
    | |  |||||| ||||||||||||| ||||||||    
T  39207123 acacgtttttactcatgttaatgttgtatgtctt 39207090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 39370039 - 39370172
Alignment:
Q  3 aagcaatttgagggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 102  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||| | ||||||||||||||||||||| |||    
T  39370039 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaacaagttcatagtgcaggtgaaggagttcgaattaaaagagaagcagtttggaagac 39370138  T
Q  103 aagtcaaggatcctaagttaaagttgaaaaaatt 136  Q
    ||||||||| || | ||| |||| |||| |||||    
T  39370139 aagtcaagggtcttgagtcaaagatgaataaatt 39370172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 39389236 - 39388918
Alignment:
Q  16 gacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 115  Q
    |||| ||||| ||||| ||||| |||||| |||||||||||||| |||| |||||| |||| |||||||| |||||||||| ||| |||||||| |||||    
T  39389236 gacgatggaacgaactggagttgaaagagtataagttcaaagtaaaggtgaaggagctcaacttaaaagaaaagcagtttgaagggcaagtcaacgatcc 39389137  T
Q  116 taagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattca 212  Q
    | ||| |||| |||| ||||| |||  || |   | | |||  | |||||||||||||||| ||||    |||| | |||| ||||||||||||||||||    
T  39389136 tgagtcaaagctgaataaatttgatggacaaataaaggagcccgagtcaaggaaaaaatattttgatggggaaaaagaatccggtaaatgttcttattca 39389037  T
Q  213 tctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgaca--atttttataacccgatctacatagttgtttaaaaatatttttaat 310  Q
    || |||||||||||||| |||   |||||| |||||||||||||||||||| |   |||||||| |  ||||||| || ||   || |||  ||||||||    
T  39389036 tccagtttattgaaagaatttttttacaactgttcctcttaatgatgatgatattttttttatagcttgatctacttaattccatagaaacgtttttaat 39388937  T
Q  311 catgttaatgttttatgtc 329  Q
    |||||||||||| ||||||    
T  39388936 catgttaatgttgtatgtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 328
Target Start/End: Complemental strand, 39192436 - 39192266
Alignment:
Q  161 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 257  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39192436 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39192337  T
Q  258 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 328  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39192336 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 328
Target Start/End: Complemental strand, 39198116 - 39197946
Alignment:
Q  161 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 257  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39198116 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39198017  T
Q  258 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 328  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39198016 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39192554 - 39192439
Alignment:
Q  1 agaagcaatttgagggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 100  Q
    |||||||||| || ||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| |||||||||| |||    
T  39192554 agaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaagg 39192455  T
Q  101 acaagtcaaggatcct 116  Q
    || |||||||||||||    
T  39192454 actagtcaaggatcct 39192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39198234 - 39198119
Alignment:
Q  1 agaagcaatttgagggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 100  Q
    |||||||||| || ||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| |||||||||| |||    
T  39198234 agaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaagg 39198135  T
Q  101 acaagtcaaggatcct 116  Q
    || |||||||||||||    
T  39198134 actagtcaaggatcct 39198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 39222932 - 39223037
Alignment:
Q  161 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 257  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||    
T  39222932 gtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatga 39223031  T
Q  258 tgatga 263  Q
    ||||||    
T  39223032 tgatga 39223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 194 - 331
Target Start/End: Original strand, 39370254 - 39370394
Alignment:
Q  194 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttataacccgatctacatagt 290  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | |||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  291 tgtttaaaaatatttttaatcatgttaatgttttatgtctt 331  Q
    | | |||||| ||| ||||||||||||||||| ||||||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtctt 39370394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 39468270 - 39468379
Alignment:
Q  3 aagcaatttgagggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 102  Q
    ||||||||||| | |||||| |||||| |  ||| ||||||||||  |||||||||| |||| ||||||||||||||||||||||||||| ||| |||||    
T  39468270 aagcaatttgatgaacggtgtaaagaattgaagtcaaaagagaatcggttcaaagtaaaggtgaaggagttcaagttaaaagagaagcagattgaaggac 39468369  T
Q  103 aagtcaagga 112  Q
    ||||||||||    
T  39468370 aagtcaagga 39468379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 39414896 - 39414761
Alignment:
Q  1 agaagcaatttgagggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 100  Q
    ||||||||||||| | ||| |||||||||||  ||  ||| ||||||||||||||| ||| ||| || ||| |||||||||| ||||| ||||||| |||    
T  39414896 agaagcaatttgaagaacgatggaaagaactcaagacaaatgagaataagttcaaactactggtcaaagagctcaagttaaatgagaaacagtttgaagg 39414797  T
Q  101 acaagtcaaggatcctaagttaaagttgaaaaaatt 136  Q
    |||||| ||||||||| ||| |||| || |||||||    
T  39414796 acaagttaaggatcctgagtcaaagctggaaaaatt 39414761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 39473522 - 39473409
Alignment:
Q  2 gaagcaatttgagggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagga 101  Q
    |||||||||||| | ||| ||||||||||| |||| |||||||||||||||||||||||  || |||    |||||||||||||||||||| ||| ||||    
T  39473522 gaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtactagtgaagtcactcaagttaaaagagaagcaggttgaagga 39473423  T
Q  102 caagtcaaggatcc 115  Q
     ||||| |||||||    
T  39473422 gaagtcgaggatcc 39473409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 39137811 - 39137895
Alignment:
Q  1 agaagcaatttgagggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 85  Q
    |||||||| |||| | ||||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  39137811 agaagcaaattgaagaacggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 39137895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 39222814 - 39222929
Alignment:
Q  1 agaagcaatttgagggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 100  Q
    ||||||||||||| | ||| |||||  ||||||||| | |||||||||||||||||| | |||| |||||| |||| || ||||| |||  ||||| |||    
T  39222814 agaagcaatttgaagaacgatggaataaacttgagtcagaagagaataagttcaaagcaaaggtgaaggagctcaacttcaaagaaaagtggtttgaagg 39222913  T
Q  101 acaagtcaaggatcct 116  Q
    ||||||||||||||||    
T  39222914 acaagtcaaggatcct 39222929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 327
Target Start/End: Complemental strand, 39381412 - 39381275
Alignment:
Q  190 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatag 289  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  ||||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  290 ttgtttaaaaatatttttaatcatgttaatgttttatg 327  Q
    ||  |||||||||||||||||| |||||||||| ||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

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Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 39397961 - 39397852
Alignment:
Q  3 aagcaatttgagggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 102  Q
    |||||| |||| | |||||||||| ||||||||| |||||||||| ||||||||||| ||||  ||||| |  ||||||||||||||||| ||| ||| |    
T  39397961 aagcaaattgaagaacggtggaaaaaacttgagtcaaaagagaatcagttcaaagtaaaggtgcaggagcttgagttaaaagagaagcaggttgcaggtc 39397862  T
Q  103 aagtcaagga 112  Q
     |||||||||    
T  39397861 gagtcaagga 39397852  T

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Target: chr2; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 39459220 - 39459295
Alignment:
Q  40 aagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 115  Q
    |||||||||||||||||||||  || || ||| ||||||||||||| ||||| |||| ||||||||||||||||||    
T  39459220 aagagaataagttcaaagtactagtgaaagagctcaagttaaaagacaagcaatttgaaggacaagtcaaggatcc 39459295  T

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Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 39381588 - 39381510
Alignment:
Q  38 aaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcct 116  Q
    |||||||||| ||||||||||| || | || ||| |||||||||||||||||||||||| | |||||| ||||||||||    
T  39381588 aaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaagagaagcagtttgaaagacaagacaaggatcct 39381510  T

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Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 39421926 - 39421832
Alignment:
Q  21 tggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 115  Q
    |||||||||||  ||| |||||||||||||||||||||||  || || ||| |||| |||||||| ||||  ||||||| || ||||||||||||    
T  39421926 tggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaagacaagcgatttggagcactagtcaaggatcc 39421832  T

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Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  190 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 235  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

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Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  190 aatcgggtaaatgttcttattcatctagtttattgaaa 227  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 39223101 - 39223154
Alignment:
Q  269 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 322  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgtt 39223154  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 39459387 - 39459431
Alignment:
Q  183 gaaacacaatcgggtaaatgttcttattcatctagtttattgaaa 227  Q
    |||||| |||||||||| ||||||||||||| ||| |||||||||    
T  39459387 gaaacagaatcgggtaagtgttcttattcatttagcttattgaaa 39459431  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 16113230 - 16113339
Alignment:
Q  3 aagcaatttgagggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 102  Q
    ||||||||||| | ||||||||||||||| || | |||||||||| ||||||||||| |||  |||||| |||||||||||||||||||| ||| || ||    
T  16113230 aagcaatttgaagaacggtggaaagaactcgaatcaaaagagaatcagttcaaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtac 16113329  T
Q  103 aagtcaagga 112  Q
    ||||||||||    
T  16113330 aagtcaagga 16113339  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  190 aatcgggtaaatgttcttattcatctagtttattgaaa 227  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 19807779 - 19807845
Alignment:
Q  19 ggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 85  Q
    ||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  19807779 ggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 19807845  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 19807963 - 19808059
Alignment:
Q  191 atcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacat 287  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| | || | ||| || || |||||| ||| | |||| |||||| |||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgatctacat 19808059  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 331
Target Start/End: Original strand, 33561135 - 33561281
Alignment:
Q  190 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttataacccgatctac 285  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||| || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  286 atagttgtttaaaaatatttttaatcatgttaatgttt-tatgtctt 331  Q
     || |  |||||| | |||||||||||||||||||||| ||||||||    
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgtttgtatgtctt 33561281  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  195 ggtaaatgttcttattcatctagtttattgaaagagtttca 235  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 45342187 - 45342305
Alignment:
Q  206 ttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa---ata 302  Q
    |||||||||||||||||||||||| ||||| | ||||  || || ||  ||||| ||| | |||| |||||| |||||||||| |  |||||||   |||    
T  45342187 ttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataacctgatctacatattcttttaaaaaatata 45342286  T
Q  303 tttttaatcatgttaatgt 321  Q
    | |||||| ||||||||||    
T  45342287 tgtttaatgatgttaatgt 45342305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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