View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6866A_low_91 (Length: 339)
Name: NF6866A_low_91
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_91 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 48 - 324
Target Start/End: Complemental strand, 43533364 - 43533088
Alignment:
| Q |
48 |
cttacaacattgttgaagagtacgactgcaaaacctgttaagagaccaaccaagcatgaagatattattcccgaattacgaatccattcagaagaagaag |
147 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43533364 |
cttacaacattgttgaagagcacgactgcaacacctgttaagagaccaaccaagcatgaagatattattcccgaattacgaatccattcagaagaagaag |
43533265 |
T |
|
| Q |
148 |
atgaagatgaaactccttcctcaacatctccttctctattttggctattattgtgaggcgggacacgaaacctccttgtagttgtgaagtttgagtaaga |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43533264 |
atgaagatgaaactccttcctcaacatctccttctctattttggctattattgtgaggcgggacacgaaacctccttgtagttgtgaagtttgagtaaga |
43533165 |
T |
|
| Q |
248 |
agaataagaagaggaagaaggaaatcctgaacgtgttactgttatcgcttttagatgatgatgataatgccaactat |
324 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43533164 |
agaataagaagaggaagaaggaaatcccgaacgtgttactgttattgcttttagatgatgatgataatgccaactat |
43533088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University