View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_high_17 (Length: 341)

Name: NF6867A_high_17
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_high_17
NF6867A_high_17
[»] chr2 (1 HSPs)
chr2 (23-341)||(38831072-38831379)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 23 - 341
Target Start/End: Original strand, 38831072 - 38831379
Alignment:
Q  23 ttaagtaaaagggtttgtaactaattaacaaacatataccaaattaaatagcaattatatatatagtaactcaccttaacttttctcttcccatgaggat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||| ||||||||||||||||||||||    
T  38831072 ttaagtaaaagggtttgtaactaattaacaaacatataccaaattaaatagcaattat-----------ctcaccttcacttttctcttcccatgaggat 38831160  T
Q  123 tattctttgattgagatgatgattttcttcctttctcaccttccttaggcaatggattcggcacaacggattcatctcttttgctaattatctcttccac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38831161 tattctttgattgagatgatgattttcttcctttctcaccttccttaggcaatggattcggcacaacggattcatctcttttgctaattatctcttccac 38831260  T
Q  223 acgactcgaacttgaatctgaagaataaactactttctcttcatcttgtaattttctctcaatactaaccatattcccatcattacaagatttgctattt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38831261 acgactcgaacttgaatctgaagaataaactactttctcttcatcttgtaattttctctcaatactaaccatattcccatcattacaagatttgctattt 38831360  T
Q  323 gcacccgacgaatttatat 341  Q
    |||||||||||||||||||    
T  38831361 gcacccgacgaatttatat 38831379  T

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