View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_high_8 (Length: 431)
Name: NF6867A_high_8
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_high_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 5607546 - 5607125
Alignment:
| Q |
11 |
atgaaggcatgttttcttcgagcaacgtaaataaaatagaacacatactttcttgttgatgttaaaattgtttacgctaagtcttgcaagaaaataaact |
110 |
Q |
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| T |
5607546 |
atgaaggcatgttttcttcgagcaacgtaaataaaatagaacgcatactttctagttgatgttaaaattgtttacgataagtcttgcaagcaaacaaact |
5607447 |
T |
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| Q |
111 |
catttacgtttaacaaaaattaagttcaaaattttaagctagaaaatccaggaatgaagaagtaagggtttttt-aatcaagataaacgaaactttaact |
209 |
Q |
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| T |
5607446 |
catttacgtttaacaaaaattaagttaaaaattttaagctagaaaatccaggaatgaagaagtaagggtttttttaatcgtgataaacgaaactttaact |
5607347 |
T |
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| Q |
210 |
tggtttcaaattgattaaaaattcatagctgaccgatctgttaagaaacaaggagtctttaattgagaggaccaaccataaatgggtttcgagtcttaga |
309 |
Q |
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| T |
5607346 |
tggtttcgaattgattaaaaattcatagctgactgatctgttaagaaacaaggagtctttaattgagaggaccaaccgtaaatgggtttcgagtcttaga |
5607247 |
T |
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| Q |
310 |
cttgttgttttcacttgattagaaaatccattgctgcactgatctgtagtatgaagaaacaagttatttttaatttagataaccatttgctttgccatag |
409 |
Q |
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| T |
5607246 |
cttgttgttttcacttgattttaaaatccatggctgcaccgatctgtagtatgaagaaacaagttatttttaatttagataaccatttgctttgccatag |
5607147 |
T |
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| Q |
410 |
agaagaagaaaaagaacaaaga |
431 |
Q |
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| T |
5607146 |
agaagaagaaaaagaacaaaga |
5607125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 42 - 406
Target Start/End: Complemental strand, 5567861 - 5567495
Alignment:
| Q |
42 |
taaaatagaacacatactttcttgttgatgttaaaattgtttacgctaagtcttgcaagaaaataaactcatttacgtttaacaaaaattaagttcaaaa |
141 |
Q |
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| T |
5567861 |
taaaattgaacacatactttcttgttgatgttaaaattgtttacgctaagtcttgcaagaaaacaaactcatttacgtttaacaaaaattaagttaaaaa |
5567762 |
T |
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| Q |
142 |
ttttaagctagaaaatccaggaatgaagaagtaagggttttttaatcaagataaacgaaactttaacttggtttcaaattgattaaaaattcatagctga |
241 |
Q |
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| T |
5567761 |
ttttaacctagaaaatccaggaatgaagaagtaagggttttttaatcgagataaccgaaactataacttggtttcaaattgattaaaaattcatagctga |
5567662 |
T |
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| Q |
242 |
ccgatctgttaagaaacaaggagtctttaattgagaggaccaaccataaatgggtttcgagtcttagacttgttgttttcacttgattag-aaaatccat |
340 |
Q |
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| T |
5567661 |
ctgatctgttaagaaacaaggagtctttaattgagaggaccaactgtaaatgggtttcgagtct--gac---ttgttttgacttgattagaaaaatccat |
5567567 |
T |
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| Q |
341 |
------tgctgcactgatctgtagtatgaagaaacaagttatttttaatttagataaccatttgctttgcca |
406 |
Q |
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| T |
5567566 |
gcatggcgctgcaccgatctgtagtttgaagaaacaagttatttttaatttagatagccattttctttgcca |
5567495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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