View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_10 (Length: 536)
Name: NF6867A_low_10
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_10 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0136 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 536
Target Start/End: Complemental strand, 24639833 - 24639304
Alignment:
| Q |
8 |
tgaaatgaaagctcaaatcaaccaaaccaatgagcacaatttgtggcttttagaagttattaagttcagtgatagttaattatttacaacacattgtcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24639833 |
tgaaatgaaagctcaaatcaaccaaaccaatgagcacaatttgtggcttttagaagttattaagttcagtgatagttaattatttacaacacattgacat |
24639734 |
T |
|
| Q |
108 |
cagtttaaacttcattaaccatctaaatcgttgtcaaatttgcatgtcaaaataataaaactcttaagtttagtgaaggaataaca-atgacttactgtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24639733 |
cagtttaaacttcattaaccatctaaatcgttgtcaaatttgcatgtcaaaataataaaactcttaagtttagtgaaggaataacatatgacttactgta |
24639634 |
T |
|
| Q |
207 |
aagataaatgagtaagaatcctctgtctgaaattcttgtctaccagaggcttcaaaaatcctgctcttattttttactgaattactaagaatacaaacca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24639633 |
aagataaatgagtaagaatcctctgtctgaaattcttgtctaccagaggcttcaaaaatcctgctcttattttttactgaattactaagaatacaaacca |
24639534 |
T |
|
| Q |
307 |
aagaatcccacatattcctattgagtgaatcaccaacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24639533 |
aagaatcccacatattcctattgagtgaatcaccaacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacat |
24639434 |
T |
|
| Q |
407 |
gctcatgtcactaaaacatcacctaaaagatacagcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24639433 |
gctcatgtcactaaaacatcacctaaaagatacagcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttc |
24639334 |
T |
|
| Q |
507 |
atgctttgttttagccccatatcaattcta |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24639333 |
atgctttgttttagccccatatcaattcta |
24639304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 536
Target Start/End: Original strand, 52490933 - 52491462
Alignment:
| Q |
8 |
tgaaatgaaagctcaaatcaaccaaaccaatgagcacaatttgtggcttttagaagttattaagttcagtgatagttaattatttacaacacattgtcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52490933 |
tgaaatgaaagctcaaatcaaccaaaccaatgagcacaatttgtggcttttagaagttattaagttcagtgatagttaattatttacaacacattgacat |
52491032 |
T |
|
| Q |
108 |
cagtttaaacttcattaaccatctaaatcgttgtcaaatttgcatgtcaaaataataaaactcttaagtttagtgaaggaataaca-atgacttactgtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52491033 |
cagtttaaacttcattaaccatctaaatcgttgtcaaatttgcatgtcaaaataataaaactcttaagtttagtgaaggaataacatatgacttactgta |
52491132 |
T |
|
| Q |
207 |
aagataaatgagtaagaatcctctgtctgaaattcttgtctaccagaggcttcaaaaatcctgctcttattttttactgaattactaagaatacaaacca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52491133 |
aagataaatgagtaagaatcctctgtctgaaattcttgtctaccagaggcttcaaaaatcctgctcttattttttactgaattactaagaatacaaacca |
52491232 |
T |
|
| Q |
307 |
aagaatcccacatattcctattgagtgaatcaccaacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52491233 |
aagaatcccacatattcctattgagtgaatcaccaacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacat |
52491332 |
T |
|
| Q |
407 |
gctcatgtcactaaaacatcacctaaaagatacagcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52491333 |
gctcatgtcactaaaacatcacctaaaagatacagcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttc |
52491432 |
T |
|
| Q |
507 |
atgctttgttttagccccatatcaattcta |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
52491433 |
atgctttgttttagccccatatcaattcta |
52491462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 5820 - 5854
Alignment:
| Q |
312 |
tcccacatattcctattgagtgaatcaccaacaaa |
346 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5820 |
tcccacatattcctattgattgaatcaccaacaaa |
5854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 37153435 - 37153469
Alignment:
| Q |
312 |
tcccacatattcctattgagtgaatcaccaacaaa |
346 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
37153435 |
tcccacatattcctattgagagaatcaccaacaaa |
37153469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University