View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_11 (Length: 519)

Name: NF6867A_low_11
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_11
NF6867A_low_11
[»] chr3 (17 HSPs)
chr3 (320-513)||(8260709-8260902)
chr3 (320-510)||(8265675-8265866)
chr3 (320-510)||(8258602-8258796)
chr3 (146-255)||(8260535-8260644)
chr3 (326-417)||(8350129-8350220)
chr3 (25-72)||(8260414-8260461)
chr3 (193-255)||(8350014-8350076)
chr3 (320-417)||(8352867-8352964)
chr3 (25-68)||(8258273-8258316)
chr3 (196-255)||(8258478-8258537)
chr3 (196-255)||(8265551-8265610)
chr3 (326-397)||(8252975-8253046)
chr3 (181-251)||(8334002-8334073)
chr3 (214-255)||(8352761-8352802)
chr3 (322-394)||(8356436-8356508)
chr3 (200-255)||(8252867-8252922)
chr3 (322-394)||(8360609-8360681)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 320 - 513
Target Start/End: Original strand, 8260709 - 8260902
Alignment:
Q  320 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260709 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 8260808  T
Q  420 gaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatat 513  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260809 gaagagggttttctgtttatgtaagtgtggaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatat 8260902  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 320 - 510
Target Start/End: Original strand, 8265675 - 8265866
Alignment:
Q  320 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 418  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  8265675 atcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8265774  T
Q  419 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttataga 510  Q
    ||||| ||||||  |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||    
T  8265775 tgaagtgggtttcttgtttatgtaagtgtggaaagctgaaatgatttagttgtgggttgaacttcatgtaattaacttgatccatttataga 8265866  T

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Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 320 - 510
Target Start/End: Original strand, 8258602 - 8258796
Alignment:
Q  320 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 418  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||    
T  8258602 atcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8258701  T
Q  419 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagt---taacttgatctatttataga 510  Q
    ||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||||||    
T  8258702 tgaagtgggttttttgtttatgtaagtgtgcaaagctgaaatgatttagttgtgggttgaacttcatgtaattaataacttgatctatttataga 8258796  T

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Target: chr3; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 8260535 - 8260644
Alignment:
Q  146 gtcgcttgctctagtctcttgataagaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactaca 245  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260535 gtcgattgctctagtctcttgataagaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactaca 8260634  T
Q  246 attggagctc 255  Q
    ||||||||||    
T  8260635 attggagctc 8260644  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 326 - 417
Target Start/End: Original strand, 8350129 - 8350220
Alignment:
Q  326 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 417  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  8350129 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaaaaagtgatttaatttgcact 8350220  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 8260414 - 8260461
Alignment:
Q  25 ttaataagaagtgaattttaaatatacatcatataatatcatgatagt 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260414 ttaataagaagtgaattttaaatatacatcatataatatcatgatagt 8260461  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 8350014 - 8350076
Alignment:
Q  193 tgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 255  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  8350014 tgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataattggagctc 8350076  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 320 - 417
Target Start/End: Original strand, 8352867 - 8352964
Alignment:
Q  320 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 417  Q
    |||||||||| |||||||||| |||||||   ||||| | ||||||||| | || || ||||||||||||||||||||||||||||||  ||||||||    
T  8352867 atcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaaaaagtgatttggtttgcact 8352964  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 8258273 - 8258316
Alignment:
Q  25 ttaataagaagtgaattttaaatatacatcatataatatcatga 68  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  8258273 ttaatgagaagtgaattttaaatatacatcatataatatcatga 8258316  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 8258478 - 8258537
Alignment:
Q  196 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 255  Q
    |||||||||||||||||||||||||||||  |||||||| | | ||||||||||||||||    
T  8258478 atgactacaaacgtgagagataagagttagtagggaaatgatatactacaattggagctc 8258537  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 8265551 - 8265610
Alignment:
Q  196 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 255  Q
    ||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||||||||    
T  8265551 atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctc 8265610  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 8252975 - 8253046
Alignment:
Q  326 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaa 397  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||    
T  8252975 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 8253046  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 8334002 - 8334073
Alignment:
Q  181 gcagattaatactgcatgactacaaacgtgagag-ataagagttaacagggaaataagaaactacaattgga 251  Q
    |||||||||||| || ||||||||| |||||| | |||| |||||||  |||||||||||||||||||||||    
T  8334002 gcagattaataccgcctgactacaagcgtgaggggataatagttaacgaggaaataagaaactacaattgga 8334073  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 8352761 - 8352802
Alignment:
Q  214 gataagagttaacagggaaataagaaactacaattggagctc 255  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  8352761 gataatagttaacagggaaataagaaactacaattgaagctc 8352802  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 394
Target Start/End: Original strand, 8356436 - 8356508
Alignment:
Q  322 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 394  Q
    ||||||||||||||||||||||||||| | ||||  | ||||||||| | ||||| | | |||||||||||||    
T  8356436 cataatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccat 8356508  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 8252867 - 8252922
Alignment:
Q  200 ctacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 255  Q
    |||||| ||||||||| ||  |||||||| ||||||||||||| ||||||||||||    
T  8252867 ctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctc 8252922  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 394
Target Start/End: Original strand, 8360609 - 8360681
Alignment:
Q  322 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 394  Q
    ||||||||||||||||||||||| ||| | ||||  | || |||||| | ||||| | |||||||||||||||    
T  8360609 cataatcagaaacttgagatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccat 8360681  T

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