View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_111 (Length: 337)
Name: NF6867A_low_111
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_111 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 45684186 - 45684025
Alignment:
| Q |
8 |
tggtgttgctgtgaaactggtaatcccttgataaaattgtttaccaactcatcctttgatttaatgtattctataatatttatcagacataaatatccat |
107 |
Q |
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| T |
45684186 |
tggtgttgctgtgaaactggtaatcccttgataaaattgtttaccaactcatcctttgatctaatgtattctataatatttatcagacataaatatccat |
45684087 |
T |
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| Q |
108 |
cgctttgtgc-ttttgatatttttgctctcacttttgaacctatttagtcttcgcacctgca |
168 |
Q |
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| T |
45684086 |
cgctttgtgctttttgatatttttgctctcacttttgaacctatttagtcttcgcgcctgca |
45684025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 215 - 332
Target Start/End: Complemental strand, 45683917 - 45683800
Alignment:
| Q |
215 |
cacttcgatgttgtttccatcgactttcatgtgctaattagaaacatttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg |
314 |
Q |
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| T |
45683917 |
cacttagatgttgtttccatcgactttcatgtgctaatcagaaacgtttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg |
45683818 |
T |
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| Q |
315 |
tgctgctgagatagttct |
332 |
Q |
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| T |
45683817 |
tgctgctgagatagttct |
45683800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 16691130 - 16691183
Alignment:
| Q |
279 |
gcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttct |
332 |
Q |
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| T |
16691130 |
gcaggctgactctgatgttcatatacattggaaaggtgctgctgaaattgttct |
16691183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 332
Target Start/End: Original strand, 1443415 - 1443470
Alignment:
| Q |
277 |
tggcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttct |
332 |
Q |
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| T |
1443415 |
tggcaggtggactctggagtgcatatacactggaaaggagctgcagaaatagttct |
1443470 |
T |
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