View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_117 (Length: 332)

Name: NF6867A_low_117
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_117
NF6867A_low_117
[»] chr5 (7 HSPs)
chr5 (105-299)||(22042553-22042746)
chr5 (298-332)||(20398667-20398701)
chr5 (299-332)||(19223555-19223588)
chr5 (299-332)||(20372945-20372978)
chr5 (299-332)||(24956878-24956911)
chr5 (299-332)||(24965341-24965374)
chr5 (299-332)||(29186310-29186343)
[»] chr3 (10 HSPs)
chr3 (14-104)||(46687400-46687490)
chr3 (298-332)||(28470249-28470283)
chr3 (298-332)||(50824351-50824385)
chr3 (298-332)||(50851475-50851509)
chr3 (299-332)||(30508-30541)
chr3 (299-332)||(8197728-8197761)
chr3 (299-332)||(14538637-14538670)
chr3 (299-332)||(17628265-17628298)
chr3 (299-332)||(17919199-17919232)
chr3 (299-332)||(27341367-27341400)
[»] chr7 (6 HSPs)
chr7 (299-332)||(30244775-30244808)
chr7 (299-332)||(4941609-4941642)
chr7 (299-332)||(4952429-4952462)
chr7 (299-332)||(10439937-10439970)
chr7 (299-332)||(12978455-12978488)
chr7 (299-332)||(18304424-18304457)
[»] chr2 (12 HSPs)
chr2 (297-332)||(20372345-20372380)
chr2 (299-332)||(14582925-14582958)
chr2 (299-332)||(15944589-15944622)
chr2 (299-332)||(15953104-15953137)
chr2 (299-332)||(17687430-17687463)
chr2 (299-332)||(20621518-20621551)
chr2 (299-332)||(25483601-25483634)
chr2 (299-332)||(25491207-25491240)
chr2 (299-332)||(35138593-35138626)
chr2 (299-332)||(35146929-35146962)
chr2 (299-332)||(41233876-41233909)
chr2 (299-332)||(42249487-42249520)
[»] scaffold0048 (1 HSPs)
scaffold0048 (298-332)||(7661-7695)
[»] chr6 (8 HSPs)
chr6 (298-332)||(5004060-5004094)
chr6 (298-332)||(5489151-5489185)
chr6 (298-332)||(25550294-25550328)
chr6 (298-332)||(35091708-35091742)
chr6 (299-332)||(5994699-5994732)
chr6 (299-332)||(13490193-13490226)
chr6 (299-332)||(23925335-23925368)
chr6 (299-332)||(30824561-30824594)
[»] scaffold0991 (1 HSPs)
scaffold0991 (299-332)||(405-438)
[»] scaffold0497 (1 HSPs)
scaffold0497 (299-332)||(10993-11026)
[»] scaffold0431 (1 HSPs)
scaffold0431 (299-332)||(139-172)
[»] scaffold0156 (1 HSPs)
scaffold0156 (299-332)||(35388-35421)
[»] scaffold0111 (1 HSPs)
scaffold0111 (299-332)||(33035-33068)
[»] scaffold0083 (1 HSPs)
scaffold0083 (299-332)||(15813-15846)
[»] scaffold0039 (1 HSPs)
scaffold0039 (299-332)||(40865-40898)
[»] scaffold0016 (1 HSPs)
scaffold0016 (299-332)||(23464-23497)
[»] scaffold0015 (1 HSPs)
scaffold0015 (299-332)||(192528-192561)
[»] scaffold0002 (1 HSPs)
scaffold0002 (299-332)||(121228-121261)
[»] chr8 (7 HSPs)
chr8 (299-332)||(4582204-4582237)
chr8 (299-332)||(17664672-17664705)
chr8 (299-332)||(17683828-17683861)
chr8 (299-332)||(17973565-17973598)
chr8 (299-332)||(26873636-26873669)
chr8 (299-332)||(26876086-26876119)
chr8 (299-332)||(30938282-30938315)
[»] chr4 (8 HSPs)
chr4 (299-332)||(8094314-8094347)
chr4 (299-332)||(8103120-8103153)
chr4 (299-332)||(10638328-10638361)
chr4 (299-332)||(12428510-12428543)
chr4 (299-332)||(12996476-12996509)
chr4 (299-332)||(21532336-21532369)
chr4 (299-332)||(27343723-27343756)
chr4 (299-332)||(52295604-52295637)
[»] chr1 (4 HSPs)
chr1 (299-332)||(21498930-21498963)
chr1 (299-332)||(31539954-31539987)
chr1 (299-332)||(31548523-31548556)
chr1 (299-332)||(35104096-35104129)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 105 - 299
Target Start/End: Original strand, 22042553 - 22042746
Alignment:
Q  105 tgtgcacattgaagaagtataacaacactgcagagtagtaaaacaaaataaaattagcagttaggaaaactgaaaatatagaatacctgatatggaagat 204  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| |    |  ||||||||||||| |||||||||||||||||||||||||||||||    
T  22042553 tgtgcacattgaagaagtataacaacagtgcagagtagtataacaacagtgcag-agcagttaggaaagctgaaaatatagaatacctgatatggaagat 22042651  T
Q  205 gtacagtttcaaaacctcccagaacttgtcttttaagcacatcacgatatccagccatttcaagtggaaagagtagttaaagatgatgtagttat 299  Q
    ||||||||||||||||||| |||| |||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  22042652 gtacagtttcaaaacctcctagaatttgtcttttaagtacaacacgatatccagccatttgaagtggaaagagttgttaaagatgatgtagttat 22042746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 20398701 - 20398667
Alignment:
Q  298 atgtcatacctcaaattttgaccacttttctctat 332  Q
    |||||||||| ||||||||||||||||||||||||    
T  20398701 atgtcataccccaaattttgaccacttttctctat 20398667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 19223555 - 19223588
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  19223555 tgtcataccccaaattttgaccacttttctctat 19223588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 20372978 - 20372945
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  20372978 tgtcataccccaaattttgaccacttttctctat 20372945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 24956911 - 24956878
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  24956911 tgtcataccccaaattttgaccacttttctctat 24956878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 24965374 - 24965341
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  24965374 tgtcataccccaaattttgaccacttttctctat 24965341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 29186343 - 29186310
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  29186343 tgtcataccccaaattttgaccacttttctctat 29186310  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 46687490 - 46687400
Alignment:
Q  14 cgaaagatacgtcggcattgccgtcgtgcctcccggcatcgatcctcagacaaacgttatctccaaagaccccacaatcatcccagaaacc 104  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||    
T  46687490 cgaaagatatgccggcattgccgtcgttcctcccggcatcgatcctcatacaaacgttatctccaaagacatcacaatcatcccagaaacc 46687400  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 28470283 - 28470249
Alignment:
Q  298 atgtcatacctcaaattttgaccacttttctctat 332  Q
    |||||||||| ||||||||||||||||||||||||    
T  28470283 atgtcataccccaaattttgaccacttttctctat 28470249  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 50824351 - 50824385
Alignment:
Q  298 atgtcatacctcaaattttgaccacttttctctat 332  Q
    |||||||||| ||||||||||||||||||||||||    
T  50824351 atgtcataccccaaattttgaccacttttctctat 50824385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 50851509 - 50851475
Alignment:
Q  298 atgtcatacctcaaattttgaccacttttctctat 332  Q
    |||||||||| ||||||||||||||||||||||||    
T  50851509 atgtcataccccaaattttgaccacttttctctat 50851475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 30541 - 30508
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  30541 tgtcataccccaaattttgaccacttttctctat 30508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 8197761 - 8197728
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  8197761 tgtcataccccaaattttgaccacttttctctat 8197728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 14538670 - 14538637
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  14538670 tgtcataccccaaattttgaccacttttctctat 14538637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 17628265 - 17628298
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  17628265 tgtcataccccaaattttgaccacttttctctat 17628298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 17919199 - 17919232
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  17919199 tgtcataccccaaattttgaccacttttctctat 17919232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 27341400 - 27341367
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  27341400 tgtcataccccaaattttgaccacttttctctat 27341367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 30244775 - 30244808
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||||||||||||||||||||||||||||    
T  30244775 tgtcatacctcaaattttgaccacttttctctat 30244808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 4941642 - 4941609
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  4941642 tgtcataccccaaattttgaccacttttctctat 4941609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 4952462 - 4952429
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    |||||||||||||||||||||||||||| |||||    
T  4952462 tgtcatacctcaaattttgaccacttttatctat 4952429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 10439937 - 10439970
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  10439937 tgtcataccccaaattttgaccacttttctctat 10439970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 12978455 - 12978488
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  12978455 tgtcataccccaaattttgaccacttttctctat 12978488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 18304457 - 18304424
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  18304457 tgtcataccccaaattttgaccacttttctctat 18304424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 297 - 332
Target Start/End: Complemental strand, 20372380 - 20372345
Alignment:
Q  297 tatgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||||| ||||||||||||||||||||||||    
T  20372380 tatgtcataccccaaattttgaccacttttctctat 20372345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 14582925 - 14582958
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  14582925 tgtcataccccaaattttgaccacttttctctat 14582958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 15944622 - 15944589
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  15944622 tgtcataccccaaattttgaccacttttctctat 15944589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 15953137 - 15953104
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  15953137 tgtcataccccaaattttgaccacttttctctat 15953104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 17687463 - 17687430
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  17687463 tgtcataccccaaattttgaccacttttctctat 17687430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 20621518 - 20621551
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  20621518 tgtcataccccaaattttgaccacttttctctat 20621551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 25483601 - 25483634
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  25483601 tgtcataccccaaattttgaccacttttctctat 25483634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 25491207 - 25491240
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  25491207 tgtcataccccaaattttgaccacttttctctat 25491240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 35138593 - 35138626
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  35138593 tgtcataccccaaattttgaccacttttctctat 35138626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 35146929 - 35146962
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  35146929 tgtcataccccaaattttgaccacttttctctat 35146962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 41233909 - 41233876
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  41233909 tgtcataccccaaattttgaccacttttctctat 41233876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 42249520 - 42249487
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  42249520 tgtcataccccaaattttgaccacttttctctat 42249487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 7695 - 7661
Alignment:
Q  298 atgtcatacctcaaattttgaccacttttctctat 332  Q
    |||||||||| ||||||||||||||||||||||||    
T  7695 atgtcataccccaaattttgaccacttttctctat 7661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 5004060 - 5004094
Alignment:
Q  298 atgtcatacctcaaattttgaccacttttctctat 332  Q
    |||||||||| ||||||||||||||||||||||||    
T  5004060 atgtcataccccaaattttgaccacttttctctat 5004094  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 5489185 - 5489151
Alignment:
Q  298 atgtcatacctcaaattttgaccacttttctctat 332  Q
    |||||||||| ||||||||||||||||||||||||    
T  5489185 atgtcataccccaaattttgaccacttttctctat 5489151  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 25550294 - 25550328
Alignment:
Q  298 atgtcatacctcaaattttgaccacttttctctat 332  Q
    |||||||||| ||||||||||||||||||||||||    
T  25550294 atgtcataccccaaattttgaccacttttctctat 25550328  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 35091742 - 35091708
Alignment:
Q  298 atgtcatacctcaaattttgaccacttttctctat 332  Q
    |||||||||| ||||||||||||||||||||||||    
T  35091742 atgtcataccccaaattttgaccacttttctctat 35091708  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 5994699 - 5994732
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  5994699 tgtcataccccaaattttgaccacttttctctat 5994732  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 13490193 - 13490226
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  13490193 tgtcataccccaaattttgaccacttttctctat 13490226  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 23925335 - 23925368
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  23925335 tgtcataccccaaattttgaccacttttctctat 23925368  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 30824594 - 30824561
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  30824594 tgtcataccccaaattttgaccacttttctctat 30824561  T

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Target: scaffold0991 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 438 - 405
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  438 tgtcataccccaaattttgaccacttttctctat 405  T

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Target: scaffold0497 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 10993 - 11026
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  10993 tgtcataccccaaattttgaccacttttctctat 11026  T

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Target: scaffold0431 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 139 - 172
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  139 tgtcataccccaaattttgaccacttttctctat 172  T

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Target: scaffold0156 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 35421 - 35388
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  35421 tgtcataccccaaattttgaccacttttctctat 35388  T

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Target: scaffold0111 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 33035 - 33068
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  33035 tgtcataccccaaattttgaccacttttctctat 33068  T

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Target: scaffold0083 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 15813 - 15846
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  15813 tgtcataccccaaattttgaccacttttctctat 15846  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 40898 - 40865
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  40898 tgtcataccccaaattttgaccacttttctctat 40865  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 23464 - 23497
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  23464 tgtcataccccaaattttgaccacttttctctat 23497  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 192528 - 192561
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  192528 tgtcataccccaaattttgaccacttttctctat 192561  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 121228 - 121261
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  121228 tgtcataccccaaattttgaccacttttctctat 121261  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 4582204 - 4582237
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    |||||||||| |||||||||||||||||||||||    
T  4582204 tgtcataccttaaattttgaccacttttctctat 4582237  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 17664705 - 17664672
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  17664705 tgtcataccccaaattttgaccacttttctctat 17664672  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 17683861 - 17683828
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  17683861 tgtcataccccaaattttgaccacttttctctat 17683828  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 17973565 - 17973598
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  17973565 tgtcataccccaaattttgaccacttttctctat 17973598  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 26873669 - 26873636
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  26873669 tgtcataccccaaattttgaccacttttctctat 26873636  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 26876119 - 26876086
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  26876119 tgtcataccccaaattttgaccacttttctctat 26876086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 30938282 - 30938315
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  30938282 tgtcataccccaaattttgaccacttttctctat 30938315  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 8094347 - 8094314
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  8094347 tgtcataccccaaattttgaccacttttctctat 8094314  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 8103153 - 8103120
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  8103153 tgtcataccccaaattttgaccacttttctctat 8103120  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 10638328 - 10638361
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  10638328 tgtcataccccaaattttgaccacttttctctat 10638361  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 12428543 - 12428510
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  12428543 tgtcataccccaaattttgaccacttttctctat 12428510  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 12996476 - 12996509
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  12996476 tgtcataccccaaattttgaccacttttctctat 12996509  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 21532369 - 21532336
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  21532369 tgtcataccccaaattttgaccacttttctctat 21532336  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 27343756 - 27343723
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  27343756 tgtcataccccaaattttgaccacttttctctat 27343723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 52295604 - 52295637
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  52295604 tgtcataccccaaattttgaccacttttctctat 52295637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 21498963 - 21498930
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  21498963 tgtcataccccaaattttgaccacttttctctat 21498930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 31539954 - 31539987
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  31539954 tgtcataccccaaattttgaccacttttctctat 31539987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 31548523 - 31548556
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  31548523 tgtcataccccaaattttgaccacttttctctat 31548556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 35104129 - 35104096
Alignment:
Q  299 tgtcatacctcaaattttgaccacttttctctat 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  35104129 tgtcataccccaaattttgaccacttttctctat 35104096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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