View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_119 (Length: 330)
Name: NF6867A_low_119
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_119 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 30708376 - 30708065
Alignment:
| Q |
12 |
atgaagtacagaggtgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatacacgaagtggatgttcacaacatgaatcaacaccatc |
111 |
Q |
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| T |
30708376 |
atgaagtacagaggtgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatgcacgaagtggatgttcacaacatgaatcaacaccatc |
30708277 |
T |
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| Q |
112 |
aactcaaacaccacaannnnnnngatcgaataatctttaattttcctcattctggtttcttccaaaatgaaagtgatgcttgggtgatcgggtaagttaa |
211 |
Q |
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| T |
30708276 |
aactcaaacaccacaatttttttgatcgaataatctttaattttcctcattctggtttcttccaaaatgaaagtgatgcttgggtgatcgggtaagttaa |
30708177 |
T |
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| Q |
212 |
atagagagggtttttatcatgtgtaaattcgtatacattaagaagtttaacatagtaatttctcattgtaacttatctattttttacttaaatatataac |
311 |
Q |
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| T |
30708176 |
atagagagggtttttattatgtgtaaattcgcattcgttaagaagtttaacatagtaatttttcattttaacttatatatttttta-ttaaatatataac |
30708078 |
T |
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| Q |
312 |
tttttaatggata |
324 |
Q |
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| T |
30708077 |
tttttaatggata |
30708065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 30727494 - 30727353
Alignment:
| Q |
26 |
tgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatacacgaagtggatgttcacaacatgaatcaacaccatcaactcaaacaccac |
125 |
Q |
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| T |
30727494 |
tgcaatatcaaacttggatgaacttgaaggtcttggctgcaccatcttgcacgaagtagacgttcacaacatgaaacaacaccattatctcaagcacagc |
30727395 |
T |
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| Q |
126 |
aannnnnnngatcgaataatctttaattttcctcattctggt |
167 |
Q |
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| T |
30727394 |
aatgattttcatcgaataatcttcaattttcctcattctggt |
30727353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 47707914 - 47707983
Alignment:
| Q |
249 |
ttaagaagtttaacatagtaatttctcattgtaacttatctattttttacttaaatatataactttttaat |
319 |
Q |
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| T |
47707914 |
ttaagaagtttaaaatagtaattttgaattgaaacttatacattttgta-ttaaatatataactttttaat |
47707983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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