View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_122 (Length: 327)
Name: NF6867A_low_122
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_122 |
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| [»] chr2 (4 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 25 - 327
Target Start/End: Original strand, 5826987 - 5827289
Alignment:
| Q |
25 |
atcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagcttatg |
124 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5826987 |
atcaaaactttcaaactaagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagcttatg |
5827086 |
T |
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| Q |
125 |
gcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaatacatc |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
5827087 |
gcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaacttcataagctctcttccaggtggttacaatacttc |
5827186 |
T |
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| Q |
225 |
ggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgag |
324 |
Q |
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| T |
5827187 |
ggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgag |
5827286 |
T |
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| Q |
325 |
gca |
327 |
Q |
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||| |
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| T |
5827287 |
gca |
5827289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 28 - 326
Target Start/End: Original strand, 5768537 - 5768835
Alignment:
| Q |
28 |
aaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagcttatggca |
127 |
Q |
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| T |
5768537 |
aaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagcttatggca |
5768636 |
T |
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| Q |
128 |
aagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaatacatcggt |
227 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||| | || || || |
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| T |
5768637 |
aagaaggaggtgctatggaggatgagataattgcagcagctaaagcagccaatgcacacaatttcataagctctcttccaaatggttatgacacctctgt |
5768736 |
T |
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| Q |
228 |
aggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgaggc |
326 |
Q |
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| T |
5768737 |
cggggaaagaggcacacagctatcaggaggacagaagcagcgtattgctattgcaagagccatgctgaaaaaccccaaaatacttttgcttgacgaggc |
5768835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 26 - 326
Target Start/End: Complemental strand, 5829913 - 5829613
Alignment:
| Q |
26 |
tcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagcttatgg |
125 |
Q |
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|||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
5829913 |
tcaaaactttcagattaagctggttgagacaacaaatggggttggttggtcaagagcctattcttttcaacgaaagcattcgtgctaacataggttatgg |
5829814 |
T |
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| Q |
126 |
caaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaatacatcg |
225 |
Q |
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|||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||| |||||||| ||| || | || || |
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| T |
5829813 |
aaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacacagcttcataagtaatcttccagatggatatgacacgtct |
5829714 |
T |
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| Q |
226 |
gtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgagg |
325 |
Q |
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|| || ||||||||||| || | || || ||||| || || || || || ||||||||| | || | |||||||| | ||||||||| |||||||||| |
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| T |
5829713 |
gttggagaaagaggcacgcaactgtccggaggacagaagcagcgcattgctattgcaagaaccatgctaaaaaaccccaaaatacttttgcttgatgagg |
5829614 |
T |
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| Q |
326 |
c |
326 |
Q |
| |
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| T |
5829613 |
c |
5829613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 5794793 - 5794881
Alignment:
| Q |
231 |
cgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgaggca |
327 |
Q |
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| T |
5794793 |
cgaaagaggcacacagttaccaggtggacaaaaacaatgt--------tgcaagagctatattgaaagaccctagaatacttttacttgatgaggca |
5794881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 29327433 - 29327126
Alignment:
| Q |
20 |
tggacatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagc |
119 |
Q |
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|||| ||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29327433 |
tggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgcgccaacatagc |
29327334 |
T |
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| Q |
120 |
ttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaat |
219 |
Q |
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|||||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| | |||||| | |
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| T |
29327333 |
ttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcgaacgcagccaatgcacacaacttcataagttctcttcctgatggttatgac |
29327234 |
T |
|
| Q |
220 |
acatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttg |
319 |
Q |
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|| || || ||||||||||||||||| |||| || ||||| || || || || || ||||||||||| || |||||||||||| ||||||||| |||| |
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| T |
29327233 |
acttctgttggcgaaagaggcacacaactatctggaggacagaagcagcgcattgcgattgcaagagccatgctgaaaaaccctaaaatacttttgcttg |
29327134 |
T |
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| Q |
320 |
atgaggca |
327 |
Q |
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|||||||| |
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| T |
29327133 |
atgaggca |
29327126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 3431268 - 3431216
Alignment:
| Q |
247 |
ttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaa |
299 |
Q |
| |
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||||| ||||||||||| ||| | || ||||||||||||||||| |||||||| |
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| T |
3431268 |
ttatctggtggacaaaagcaaaggattgcaattgcaagagctatgttgaaaaa |
3431216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 17872447 - 17872391
Alignment:
| Q |
225 |
ggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgc |
281 |
Q |
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|||||| |||||||| | || ||||||||||||||||||||| | ||||||||||| |
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| T |
17872447 |
ggtaggagaaagagggattcaattatcaggtggacaaaaacaaagaatagcaattgc |
17872391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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