View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_129 (Length: 319)

Name: NF6867A_low_129
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_129
NF6867A_low_129
[»] chr8 (3 HSPs)
chr8 (14-314)||(4146073-4146373)
chr8 (274-314)||(8018266-8018306)
chr8 (227-314)||(17654700-17654787)
[»] chr3 (1 HSPs)
chr3 (222-314)||(41430382-41430474)
[»] chr6 (1 HSPs)
chr6 (227-314)||(12734679-12734766)
[»] chr7 (1 HSPs)
chr7 (237-314)||(30269629-30269706)
[»] chr1 (2 HSPs)
chr1 (239-314)||(31525096-31525171)
chr1 (237-314)||(44269660-44269737)
[»] chr5 (2 HSPs)
chr5 (227-314)||(11106952-11107039)
chr5 (223-302)||(42367588-42367667)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 4146073 - 4146373
Alignment:
Q  14 ttcttgtacaaataaaaacaaaagaacttaggagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttcaatccttaagc 113  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146073 ttcttgtacaaataaaaacaaaagaacttagaagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttcaatccttaagc 4146172  T
Q  114 cctttagtctctatatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgtatagannnnn 213  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  4146173 cctttagtctctttatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgtatagattttt 4146272  T
Q  214 nngttaagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaacttt 313  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146273 ttgttaagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaacttt 4146372  T
Q  314 t 314  Q
    |    
T  4146373 t 4146373  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 8018306 - 8018266
Alignment:
Q  274 atcttttgaattttcttcggagtcatgcagctggaactttt 314  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  8018306 atcttttgaattttcttcggagtgatgcagctgaaactttt 8018266  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 17654787 - 17654700
Alignment:
Q  227 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 314  Q
    |||||| || |||||||||||||||||||| | |||| || |  || ||| ||||||||||||| ||||| ||||| ||| |||||||    
T  17654787 tgcctcatcaaactttgagtttctttgtcatgagtcttctccatcggatcgtttgaattttctttggagtgatgcatctgaaactttt 17654700  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 41430474 - 41430382
Alignment:
Q  222 tttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 314  Q
    |||| |||||| || |||||||||||||||||||||| |||| ||| | || ||||||||||||||||||||||| |||||||||||||||||    
T  41430474 tttgctgcctcatcaaactttgagtttctttgtcacgagtctcctttggcggatcttttgaattttcttcggagtgatgcagctggaactttt 41430382  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 314
Target Start/End: Original strand, 12734679 - 12734766
Alignment:
Q  227 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 314  Q
    |||||| || |||||||||||||||| ||||| |||| || | ||| ||||||||||| ||||||||||| |||||||||||||||||    
T  12734679 tgcctcatcaaactttgagtttctttatcacgagtctcctccaacggatcttttgaatcttcttcggagtgatgcagctggaactttt 12734766  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 30269706 - 30269629
Alignment:
Q  237 aactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 314  Q
    |||||||||||||||||||||| |||| || | || |||||||| || |||||||||||| |||||||||||||||||    
T  30269706 aactttgagtttctttgtcacgagtctcctccaacaaatcttttcaactttcttcggagtgatgcagctggaactttt 30269629  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 31525096 - 31525171
Alignment:
Q  239 ctttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 314  Q
    |||||||||||||||||||| |||| || | ||| ||||||||||| ||||||| ||| ||||||||||| |||||    
T  31525096 ctttgagtttctttgtcacgagtctcctccaacggatcttttgaatcttcttcgcagtgatgcagctggagctttt 31525171  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 44269737 - 44269660
Alignment:
Q  237 aactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 314  Q
    |||||||||||||||||||||| |||| || |   | ||||||||||| ||||||| ||| |||||||||||||||||    
T  44269737 aactttgagtttctttgtcacgagtctcctccagtggatcttttgaatcttcttcgaagtgatgcagctggaactttt 44269660  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 314
Target Start/End: Original strand, 11106952 - 11107039
Alignment:
Q  227 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 314  Q
    |||||| || |||| ||||||||||||| ||| |||| || | ||| ||||||||||| ||||||||||| ||| || ||||||||||    
T  11106952 tgcctcatcaaactctgagtttctttgttacgagtctcctccaacggatcttttgaatcttcttcggagtgatgtagttggaactttt 11107039  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 302
Target Start/End: Complemental strand, 42367667 - 42367588
Alignment:
Q  223 ttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgca 302  Q
    |||||| ||| || |||||| ||||||||||||| | |||| |||||||| ||||||| | ||||||| ||||| |||||    
T  42367667 ttgatgactcatcaaactttaagtttctttgtcaagagtcttcttcgacggatcttttaagttttctttggagtgatgca 42367588  T

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