View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_133 (Length: 313)
Name: NF6867A_low_133
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_133 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 25545132 - 25545417
Alignment:
| Q |
22 |
gagttggattatgccattgattccttcggttccttttctgtgtatctgctgctctctcatattcttgctgccatttggtcttttgtcgggttaaccatcg |
121 |
Q |
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| T |
25545132 |
gagttggattatgccattgattccttcggttccttttctgtgtacctgctgctctctcatattcttgctgccatttggtcttttgtcgggttaaccatcg |
25545231 |
T |
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| Q |
122 |
gagttttactttgcagtttgcgtagaacaagctgtggattctaactagctcttggtgatagtattgattactttctaaagatttgtgttccttgaatgat |
221 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25545232 |
gagttttactttgcagtttgcggagaacaagctgtggattctaactagctcttggtgatagtattgattactttctaaagatttgtgttccttgaatgat |
25545331 |
T |
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| Q |
222 |
atgccaaggagtctacaactctttgcatacccttatgttaattccataagtcgcagatacaactcttcatccctcatattcttcga |
307 |
Q |
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| T |
25545332 |
atgccaaggagtctacaactctttgcatacccttatgttaattccataagtcgcagatacaactcttaatccctcatttttttcga |
25545417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 1154608 - 1154496
Alignment:
| Q |
24 |
gttggattatgccattgattccttcggttccttttctgtgtatctgctgctctctcatattcttgctgccatttggtcttttgtcgggttaaccatcgga |
123 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||| | |||||||||||||| |
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| T |
1154608 |
gttggattatgccattaattccttcggttccttttctgtgtaactactgctctatcatattcttgctgccgtttggtcttttgccaggttaaccatcgga |
1154509 |
T |
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| Q |
124 |
gttttactttgca |
136 |
Q |
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| T |
1154508 |
gttttactttgca |
1154496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 1155121 - 1155160
Alignment:
| Q |
103 |
tttgtcgggttaaccatcggagttttactttgcagtttgc |
142 |
Q |
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| T |
1155121 |
tttgccgggttaactatcggagttttactttgcagtttgc |
1155160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 38041406 - 38041466
Alignment:
| Q |
238 |
aactctttgcatacccttatgttaattccataagtcgcagatacaactcttcatccctcat |
298 |
Q |
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|||||||||||||||| | ||||||||||| |||| || ||||||||||||| |||||||| |
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| T |
38041406 |
aactctttgcatacccctctgttaattccagaagttgcggatacaactcttcgtccctcat |
38041466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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