View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_134 (Length: 313)
Name: NF6867A_low_134
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_134 |
 | |
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| [»] scaffold0491 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 2338377 - 2338668
Alignment:
| Q |
16 |
atggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttcagt |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
2338377 |
atggttgtgagtgaaaagtgcgatgtatatagttttggagtagtggcacttgaaactttaatgggaagacaccctggtgatatactatcatagcttcagt |
2338476 |
T |
|
| Q |
116 |
tagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgctgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2338477 |
tagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgccgt |
2338576 |
T |
|
| Q |
216 |
agtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgttaa |
307 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| || |||||||| |||||| |||||| ||||||| ||| ||||| || |||| |||| |
|
|
| T |
2338577 |
agtagcatttggatgcttaaatctcaacccttgcgctcgaccatcaatgaaaagtgtgtcacagagttttgtcccagagattgcaccattaa |
2338668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 2330521 - 2330807
Alignment:
| Q |
16 |
atggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttcagt |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
2330521 |
atggttgtgagtgaaaagtgcgatgtatatagttttggagttgtggcacttgaaactttaatgggaagacaccctggtgatatactgtcatcacttcagt |
2330620 |
T |
|
| Q |
116 |
tagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgctgt |
215 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
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|
| T |
2330621 |
tagcatcgactcaagggatgaaattatgtgaagtattagaccaacgtctcccacttccaaataatgtaaaggttttactggacataattcgtgttgccgt |
2330720 |
T |
|
| Q |
216 |
agtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacacc |
302 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| || |||||||| |||||| |||||| ||||||| |||| ||||||| |||| |
|
|
| T |
2330721 |
agtagcatttggatgcttaaatctcaacccttgcgctcgaccatcaatgaaaagtgtgtcacagagttttgtcatagagcttgcacc |
2330807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 2321901 - 2322162
Alignment:
| Q |
10 |
tatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcac |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2321901 |
tatactatggttgtgagtgaaaagtgcgatgtatatagctttggagttgtggcacttgaaactttaatgggaagacaccctggtgatatactgtcatcac |
2322000 |
T |
|
| Q |
110 |
ttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgt |
209 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||||||||||||||| ||||| | |||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
2322001 |
ttcagttagcatcaactcaaggcattaagttatgtgaagtattagaccaacgtcttctacttccgaataatgtgatggttttacttgacataattcgtgt |
2322100 |
T |
|
| Q |
210 |
tgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtg |
271 |
Q |
| |
|
||| | | |||||||| |||||||||||||| ||| |||||||||| |||||| |||| |
|
|
| T |
2322101 |
tgccacaatagcatttgcttgcttaaatctcaatcctttctctcgaccaacaatgaaatgtg |
2322162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 3954728 - 3954500
Alignment:
| Q |
10 |
tatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcac |
109 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||| | || | || ||| ||||||||| |
|
|
| T |
3954728 |
tatactatggttgtaagtgaaaaatgtgatgtatatagttttggagtagtggcacttgaaattttagtgggaagatatcccgaggaaatattgtcatcac |
3954629 |
T |
|
| Q |
110 |
ttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgt |
209 |
Q |
| |
|
|||| ||| |||| ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||| |
|
|
| T |
3954628 |
ttcaattaacatcaactcaagacatcaaattatgtgaagtattagaccaacgtctcccacttccaaatgatgtgaaagttttacttgacataattcatgt |
3954529 |
T |
|
| Q |
210 |
tgctgtagtcgcatttgcatgcttaaatc |
238 |
Q |
| |
|
|| |||||| |||| |||||||||||||| |
|
|
| T |
3954528 |
tgttgtagtagcatctgcatgcttaaatc |
3954500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 1089241 - 1089490
Alignment:
| Q |
9 |
ttatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatca |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||| ||||||| |||||| ||||||| |
|
|
| T |
1089241 |
ttatactatggctgtgagtgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagttggaaggcaccctgaagatatattgtcatcc |
1089340 |
T |
|
| Q |
109 |
cttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtg |
208 |
Q |
| |
|
||||| | | ||||||| ||| | || ||||||||| ||||||||||||| ||||| |||||||||| ||| | | | | | | ||||||||||| || |
|
|
| T |
1089341 |
cttcaatcaacatcgacacaaagtatcaaattatgtcaagtattagaccaacgtcttccacttccaagtaaagaaatagctatccatgacataattcatg |
1089440 |
T |
|
| Q |
209 |
ttgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgacca |
258 |
Q |
| |
|
|||| || || ||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
1089441 |
ttgccgtggtagcatttgcatgcttaaatctcaatcctcgttctcgacca |
1089490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 1556976 - 1556679
Alignment:
| Q |
10 |
tatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcac |
109 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||| ||||| || || ||||||||||||||| | ||||| || ||||| ||| |||||||||||| |
|
|
| T |
1556976 |
tatactatggttgtgaatgaaaagtgtgatgcatatagttttggtgttgtagcacttgaaactttagttggaaggcatcctggagatttactgtcatcac |
1556877 |
T |
|
| Q |
110 |
ttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgt |
209 |
Q |
| |
|
|||||| | ||||||| | | | | ||| ||||| ||||||||||||||||||| |||||||||||||||| | ||| ||| ||||||||||| ||| |
|
|
| T |
1556876 |
ttcagtcaacatcgacacgaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataatgacatagttatacgtgacataattcatgt |
1556777 |
T |
|
| Q |
210 |
tgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgttaa |
307 |
Q |
| |
|
|| || || |||||||||||||||||| |||| |||| ||||||||| |||||| |||||| | ||||| ||||| || |||||||| |||| |
|
|
| T |
1556776 |
tgtcgtggttgcatttgcatgcttaaatatcaatcctcattctcgaccaacaatgaaacgtgtgtcacaaagttttgtcactgaacttacaccattaa |
1556679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 1596995 - 1597292
Alignment:
| Q |
10 |
tatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcac |
109 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||| || |||||||||||||||||| | ||||| |||||||| ||| || ||||||||| |
|
|
| T |
1596995 |
tatactatggcggtgaatgaaaagtgtgatgtatatagctttggcgtggtggcacttgaaactttagttggaaggcaccctggggatttattgtcatcac |
1597094 |
T |
|
| Q |
110 |
ttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgt |
209 |
Q |
| |
|
|||| | | ||||||| ||| | | ||| ||||| ||||||||||||| ||||| |||||||||||||||| || ||| ||| | ||||||||| ||| |
|
|
| T |
1597095 |
ttcaatcatcatcgacacaaagtctcaaactatgtcaagtattagaccaacgtcttccacttccaaataatgagatagttatacgtcacataattcatgt |
1597194 |
T |
|
| Q |
210 |
tgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgttaa |
307 |
Q |
| |
|
||| |||| |||||||||||||||| | | | ||||| ||||||||| |||||| |||||| | ||||| ||||| ||||||||||| |||| |
|
|
| T |
1597195 |
tgccatagttgcatttgcatgcttaactattgatcctcgttctcgaccaacaatgaaacgtgtgtcacaaagttttgtcaccgagcttacaccattaa |
1597292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 1550156 - 1549892
Alignment:
| Q |
10 |
tatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcac |
109 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||||||||||| ||||| ||||||||||||||||| ||| | |||| ||||||| |||||| || |||||| |
|
|
| T |
1550156 |
tatactatggctgtgaatgagaagtgtgatgtatatagttttggtgtagtggcacttgaaacattagttggaaagcaccctgaggatatattggcatcac |
1550057 |
T |
|
| Q |
110 |
ttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgt |
209 |
Q |
| |
|
|||| | ||||||| ||| | || ||||||||| ||||||||||||| ||| | |||||||||||||||| | ||| ||| ||||||||||| || |
|
|
| T |
1550056 |
ttcaatctccatcgacacaaagtatcaaattatgtcaagtattagaccaacgtattccacttccaaataatgaaatagttatacgtgacataattcaagt |
1549957 |
T |
|
| Q |
210 |
tgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgt |
274 |
Q |
| |
|
||| || || ||||||||||| ||||||||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
1549956 |
tgccgtggtagcatttgcatgtttaaatctcaatcctcgctctcgaccaacaatgaaatgtgtgt |
1549892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 1604968 - 1605266
Alignment:
| Q |
9 |
ttatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatca |
108 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||||| | ||||| ||||||| |||||| |||||||| |
|
|
| T |
1604968 |
ttatacaatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaagctttagttggaaggcaccctgaggatatattgtcatca |
1605067 |
T |
|
| Q |
109 |
cttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatg-tgaaggttttacttgacataattcgt |
207 |
Q |
| |
|
||||| | | ||||| ||| | | ||| ||||| ||||||||||||||||||| |||||||||||||| | || | ||| ||| ||||||||||| | |
|
|
| T |
1605068 |
cttcaatcaaattcgacacaaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataacgatgta-gttatacgtgacataattcat |
1605166 |
T |
|
| Q |
208 |
gttgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgttaa |
307 |
Q |
| |
|
||||| || || |||||||||||||||||| |||| ||||| ||||||||| |||||| |||||| | ||||| ||||| ||||| ||||| |||| |
|
|
| T |
1605167 |
gttgccgtggttgcatttgcatgcttaaatatcaatcctcgttctcgaccaacaatgaaacgtgtgtcacaaagttttgtcacggagctcacaccattaa |
1605266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 3853223 - 3853449
Alignment:
| Q |
10 |
tatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcac |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||| ||| |||||||||||| |||| | |||||||| |||| || ||| ||||||||| |
|
|
| T |
3853223 |
tatactatggttgtaagtgaaaagtgtgatgtatatagttttggggtaatggcacttgaaattttattgggaagacatcctgaggaaatattgtcatcac |
3853322 |
T |
|
| Q |
110 |
ttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgt |
209 |
Q |
| |
|
|||| ||| |||| ||||||| ||| ||| || |||||||| ||||| | ||||||| || ||||||||||| || ||||| |||| |||| |||| || |
|
|
| T |
3853323 |
ttcaattaacatcaactcaagacatcaaactacgtgaagtactagacaaacgtctccaacgtccaaataatgagatggtttcacttcacattattcaggt |
3853422 |
T |
|
| Q |
210 |
tgctgtagtcgcatttgcatgcttaaa |
236 |
Q |
| |
|
|||||| || ||||||||||| ||||| |
|
|
| T |
3853423 |
tgctgtcgtagcatttgcatgtttaaa |
3853449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 1540931 - 1540636
Alignment:
| Q |
10 |
tatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcac |
109 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| ||||| |||||| |||||||||||||| | ||||| |||||||| ||| || ||||||||| |
|
|
| T |
1540931 |
tatactatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtgacacttgaaactttagttggaaggcaccctggggatttattgtcatcac |
1540832 |
T |
|
| Q |
110 |
ttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgt |
209 |
Q |
| |
|
|||| | | ||||||| | | | ||| || || ||||||||||||| ||||| |||||||||||||||| | ||| ||| ||||||||||| ||| |
|
|
| T |
1540831 |
ttcaatcaacatcgacaagaagtgtcaaactacgtcaagtattagaccaacgtcttccacttccaaataatgacatagttatacgtgacataattcatgt |
1540732 |
T |
|
| Q |
210 |
tgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgtt |
305 |
Q |
| |
|
| | | || |||||||||||||||||| ||| ||||| ||||||||| |||||| |||||| | ||||| ||||| |||||||||||||| |
|
|
| T |
1540731 |
ttccctggtagcatttgcatgcttaaatggcaatcctcgttctcgaccaacaatgaaacgtgtgtcacaaagttttgtcaccgagcttacaccgtt |
1540636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 1106581 - 1106830
Alignment:
| Q |
9 |
ttatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatca |
108 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||||| | ||||| ||||||| |||||| |||||||| |
|
|
| T |
1106581 |
ttatacaatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaagctttagttggaaggcaccctgaggatatattgtcatca |
1106680 |
T |
|
| Q |
109 |
cttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtg |
208 |
Q |
| |
|
||||| | | ||| | ||| | | ||| ||||| ||||||||||||||||||| |||||||||||||| | ||| ||| ||||||||||| || |
|
|
| T |
1106681 |
cttcaatcaaattcgccacaaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataacgacgtagttatacgtgacataattcatg |
1106780 |
T |
|
| Q |
209 |
ttgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgacca |
258 |
Q |
| |
|
|||| || || |||||||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
1106781 |
ttgccgtggttgcatttgcatgcttaaatatcaatcctcgttctcgacca |
1106830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 272
Target Start/End: Complemental strand, 1564200 - 1563970
Alignment:
| Q |
42 |
atatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttcagttagcatcgactcaaggcatgaaatta |
141 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||| | ||||| | ||||| |||||| ||||||||||||| | | ||||||| ||| | || |||||| |
|
|
| T |
1564200 |
atatagttttggtgtagtgacacttgaaactttagttggaaggaaacctggagatatattgtcatcacttcaatcaacatcgacacaaagtatcaaatta |
1564101 |
T |
|
| Q |
142 |
tgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgctgtagtcgcatttgcatgcttaaatctca |
241 |
Q |
| |
|
||| ||||||||||||| ||||| | |||||||||||| | | ||| ||| ||||||||||| |||||| || || ||||||||| | |||||||||| |
|
|
| T |
1564100 |
tgtcaagtattagaccaacgtcttcgacttccaaataacgaaatagttatacgtgacataattcatgttgccgtggtagcatttgcaagtttaaatctca |
1564001 |
T |
|
| Q |
242 |
accctcgctctcgaccagaaatgaagtgtgt |
272 |
Q |
| |
|
| ||||| ||||||||| |||||| ||||| |
|
|
| T |
1564000 |
atcctcgttctcgaccaacaatgaaatgtgt |
1563970 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 258
Target Start/End: Original strand, 2335141 - 2335308
Alignment:
| Q |
94 |
gatatactgtcatcacttcagttagcatcgactcaaggcatgaaatta---tgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttt |
190 |
Q |
| |
|
|||||| ||||||||||||| || ||||| |||| |||||||||||| |||||||||||||| || | || || | ||||||||||||||| ||||| |
|
|
| T |
2335141 |
gatatattgtcatcacttcaatttgcatcaactctcggcatgaaattattatgtgaagtattagaacaacatcccctatttccaaataatgtgatggttt |
2335240 |
T |
|
| Q |
191 |
tacttgacataattcgtgttgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgacca |
258 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
2335241 |
tacttgacataattcgtgttgtcattgtagcatttgcatgcttaaatctcaatccttgctcttgacca |
2335308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 274
Target Start/End: Original strand, 2326313 - 2326455
Alignment:
| Q |
134 |
tgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgac--ataattcgtgttgctgtagtcgcatttgcatgc |
231 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||| |||||||||||||| |||| |||||||||| | |
|
|
| T |
2326313 |
tgaagttatgtgaagtattagaccaacgtctcccacttctgaataatatgatggttttacttgacatataattcgtgttgccttagtagcatttgcatac |
2326412 |
T |
|
| Q |
232 |
ttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgt |
274 |
Q |
| |
|
||||||||||| ||| |||||||||| |||||| ||||||| |
|
|
| T |
2326413 |
ttaaatctcaatcctttctctcgaccaacaatgaaatgtgtgt |
2326455 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 5583 - 5296
Alignment:
| Q |
10 |
tatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcac |
109 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| ||| || ||||||||| |
|
|
| T |
5583 |
tatactatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagctggaaggcaccctggggatttattgtcatcac |
5484 |
T |
|
| Q |
110 |
ttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgt |
209 |
Q |
| |
|
|||| | | ||||||| ||| | | ||| ||||| ||||||||||||||||||| |||||||||||||||| | |||| ||| | ||||||||| | | |
|
|
| T |
5483 |
ttcaatcaacatcgacacaaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataatgaaatggttatacgtaacataattcattt |
5384 |
T |
|
| Q |
210 |
tgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagctt |
297 |
Q |
| |
|
||| || || || ||||||||||||||| |||| ||||| ||||||||| |||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
5383 |
tgccgttgttgcctttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagctt |
5296 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 18738811 - 18738524
Alignment:
| Q |
10 |
tatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcac |
109 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||||||| ||| || ||||||||| |
|
|
| T |
18738811 |
tatactatggctgttaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagttggaaggcaccctggggatttattgtcatcac |
18738712 |
T |
|
| Q |
110 |
ttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgt |
209 |
Q |
| |
|
|||| | | ||||||| ||| | | ||| ||||| ||||||||||||| ||||| |||||||||||||||| | ||| ||| ||||||||||| || |
|
|
| T |
18738711 |
ttcaatcaacatcgacacaaagtctcaaactatgtcaagtattagaccaccgtcttccacttccaaataatgacatagttatacgtgacataattcatgc |
18738612 |
T |
|
| Q |
210 |
tgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagctt |
297 |
Q |
| |
|
||| || || |||||||||||||||||| |||| ||||| ||||||||| |||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
18738611 |
tgccgtggtagcatttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagctt |
18738524 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 18743775 - 18743488
Alignment:
| Q |
10 |
tatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcac |
109 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||||||| ||| || ||||||||| |
|
|
| T |
18743775 |
tatactatggctgttaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagttggaaggcaccctggggatttattgtcatcac |
18743676 |
T |
|
| Q |
110 |
ttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgt |
209 |
Q |
| |
|
|||| | | ||||||| ||| | | ||| ||||| ||||||||||||| ||||| |||||||||||||||| | ||| ||| ||||||||||| || |
|
|
| T |
18743675 |
ttcaatcaacatcgacacaaagtctcaaactatgtcaagtattagaccaccgtcttccacttccaaataatgacatagttatacgtgacataattcatgc |
18743576 |
T |
|
| Q |
210 |
tgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagctt |
297 |
Q |
| |
|
||| || || |||||||||||||||||| |||| ||||| ||||||||| |||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
18743575 |
tgccgtggtagcatttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagctt |
18743488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 18748742 - 18748455
Alignment:
| Q |
10 |
tatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcac |
109 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| ||| || ||||||||| |
|
|
| T |
18748742 |
tatactatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagctggaaggcaccctggggatttattgtcatcac |
18748643 |
T |
|
| Q |
110 |
ttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgt |
209 |
Q |
| |
|
|||| | | ||||||| ||| | | ||| ||||| ||||||||||||||||||| |||||||||||||||| | |||| ||| | ||||||||| | | |
|
|
| T |
18748642 |
ttcaatcaacatcgacacaaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataatgaaatggttatacgtaacataattcattt |
18748543 |
T |
|
| Q |
210 |
tgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagctt |
297 |
Q |
| |
|
||| || || || ||||||||||||||| |||| ||||| ||||||||| |||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
18748542 |
tgccgttgttgcctttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagctt |
18748455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 18723090 - 18722826
Alignment:
| Q |
10 |
tatactatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcac |
109 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| ||| || ||||||||| |
|
|
| T |
18723090 |
tatactatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagctggaaggcaccctggggatttattgtcatcac |
18722991 |
T |
|
| Q |
110 |
ttcagttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgt |
209 |
Q |
| |
|
|||| | | |||| || ||| | | ||| ||| | ||||||||||||||||||| |||||||||||||||| | |||| ||| | ||||||||| | | |
|
|
| T |
18722990 |
ttcaatcaacatcaacacaaagtgtcaaactatatcaagtattagaccagcgtcttccacttccaaataatgaaatggttatacgtaacataattcattt |
18722891 |
T |
|
| Q |
210 |
tgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgt |
274 |
Q |
| |
|
||| || || || ||||||||||||||| |||| ||||| ||||||||| |||||| ||||||| |
|
|
| T |
18722890 |
tgccgttgttgcctttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgt |
18722826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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