View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_138 (Length: 311)

Name: NF6867A_low_138
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_138
NF6867A_low_138
[»] chr4 (14 HSPs)
chr4 (21-307)||(42533576-42533855)
chr4 (170-307)||(44432656-44432793)
chr4 (170-307)||(5274266-5274403)
chr4 (170-307)||(22047141-22047278)
chr4 (170-307)||(4839767-4839904)
chr4 (178-307)||(46692769-46692898)
chr4 (170-306)||(55326168-55326304)
chr4 (170-289)||(6639362-6639481)
chr4 (170-293)||(19248428-19248550)
chr4 (170-291)||(26069075-26069195)
chr4 (170-300)||(8894231-8894360)
chr4 (170-281)||(35417446-35417556)
chr4 (170-281)||(40996292-40996403)
chr4 (212-289)||(30219079-30219155)
[»] chr5 (13 HSPs)
chr5 (170-307)||(24835153-24835290)
chr5 (170-307)||(11723906-11724043)
chr5 (170-307)||(14343886-14344023)
chr5 (170-307)||(30607811-30607948)
chr5 (170-307)||(33434001-33434138)
chr5 (170-307)||(7314379-7314516)
chr5 (170-307)||(9403714-9403851)
chr5 (170-307)||(34455588-34455725)
chr5 (170-299)||(11766150-11766279)
chr5 (170-306)||(6269310-6269447)
chr5 (170-307)||(34870300-34870436)
chr5 (174-286)||(30422188-30422299)
chr5 (203-257)||(42748256-42748310)
[»] chr2 (9 HSPs)
chr2 (170-307)||(29223108-29223245)
chr2 (170-307)||(29336407-29336544)
chr2 (170-307)||(8684070-8684208)
chr2 (170-305)||(32522389-32522515)
chr2 (170-307)||(36668470-36668606)
chr2 (170-230)||(29226734-29226794)
chr2 (170-230)||(29340033-29340093)
chr2 (171-230)||(29792577-29792636)
chr2 (170-248)||(31757719-31757798)
[»] chr8 (15 HSPs)
chr8 (170-307)||(27347441-27347578)
chr8 (170-299)||(3298196-3298325)
chr8 (170-307)||(27353521-27353658)
chr8 (170-307)||(28926774-28926911)
chr8 (170-307)||(22179904-22180041)
chr8 (170-307)||(8743998-8744135)
chr8 (170-307)||(9068797-9068934)
chr8 (170-307)||(36737491-36737627)
chr8 (170-300)||(1606597-1606726)
chr8 (170-240)||(16957902-16957972)
chr8 (170-222)||(28369590-28369642)
chr8 (170-281)||(24040007-24040117)
chr8 (170-248)||(4435537-4435615)
chr8 (170-248)||(21687383-21687462)
chr8 (170-248)||(21691707-21691786)
[»] chr7 (18 HSPs)
chr7 (170-307)||(22817833-22817970)
chr7 (170-307)||(7143052-7143189)
chr7 (170-307)||(10346936-10347073)
chr7 (170-307)||(23794488-23794625)
chr7 (170-299)||(31158914-31159043)
chr7 (170-307)||(2630815-2630951)
chr7 (170-307)||(12183260-12183397)
chr7 (170-307)||(22322514-22322651)
chr7 (170-307)||(19472890-19473027)
chr7 (170-307)||(45501261-45501399)
chr7 (170-307)||(2477075-2477212)
chr7 (170-307)||(2798171-2798308)
chr7 (186-307)||(31878032-31878153)
chr7 (170-249)||(31001376-31001455)
chr7 (170-257)||(24169396-24169483)
chr7 (172-304)||(29863923-29864054)
chr7 (178-250)||(8139848-8139920)
chr7 (170-257)||(20403080-20403168)
[»] chr6 (11 HSPs)
chr6 (170-307)||(26511131-26511268)
chr6 (170-307)||(26516247-26516384)
chr6 (170-299)||(3538442-3538571)
chr6 (170-307)||(9934615-9934752)
chr6 (170-307)||(34005899-34006036)
chr6 (170-307)||(24161855-24161991)
chr6 (172-297)||(26603622-26603746)
chr6 (170-307)||(31131281-31131417)
chr6 (212-307)||(15641761-15641855)
chr6 (170-257)||(2298291-2298378)
chr6 (170-304)||(5671670-5671803)
[»] chr3 (13 HSPs)
chr3 (170-307)||(3587794-3587931)
chr3 (170-307)||(27031417-27031554)
chr3 (170-298)||(10407589-10407717)
chr3 (170-307)||(4755488-4755625)
chr3 (170-307)||(52045513-52045650)
chr3 (170-307)||(52308623-52308760)
chr3 (170-307)||(7653851-7653987)
chr3 (170-307)||(8614919-8615055)
chr3 (155-303)||(36470063-36470211)
chr3 (177-274)||(11263597-11263694)
chr3 (170-292)||(33247303-33247424)
chr3 (165-241)||(36981132-36981208)
chr3 (165-241)||(37006571-37006647)
[»] chr1 (9 HSPs)
chr1 (170-307)||(16833380-16833517)
chr1 (170-307)||(38122667-38122804)
chr1 (170-307)||(12168806-12168943)
chr1 (170-307)||(33492826-33492962)
chr1 (172-307)||(13218665-13218800)
chr1 (170-282)||(39453351-39453462)
chr1 (170-287)||(25242411-25242528)
chr1 (170-297)||(13829599-13829725)
chr1 (170-281)||(16129005-16129115)
[»] scaffold0015 (2 HSPs)
scaffold0015 (170-299)||(174039-174168)
scaffold0015 (170-299)||(185197-185326)
[»] scaffold0002 (1 HSPs)
scaffold0002 (170-307)||(354370-354507)
[»] scaffold1494 (1 HSPs)
scaffold1494 (170-307)||(960-1096)
[»] scaffold0019 (1 HSPs)
scaffold0019 (170-307)||(117261-117398)
[»] scaffold0059 (1 HSPs)
scaffold0059 (170-307)||(17103-17240)
[»] scaffold0014 (1 HSPs)
scaffold0014 (170-255)||(79922-80007)
[»] scaffold0744 (1 HSPs)
scaffold0744 (170-293)||(1852-1974)
[»] scaffold0458 (1 HSPs)
scaffold0458 (170-297)||(10197-10323)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 42533855 - 42533576
Alignment:
Q  21 atcaatagtttgaggcgactagctcaccttgccaggtccggaccaaatcaacggcaaatggaatatgctaagaaatatgacaacacacgaattcacatct 120  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  42533855 atcaatagtttgaggcgactagctcaccttaccaggtccggaccaaatcaacggcaaatggaatatgctaagaaat-------cacacgaattcacatct 42533763  T
Q  121 tccgcaatggttttcaacagcaacacaaattcttgcttgatgcttgaagagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgact 220  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42533762 tcctcaatggttttcaacagcaacacagattcttgcttgatgcttgataagtgctcaaaagtaacatatttcatgtgctaacttaggcaaattagtgact 42533663  T
Q  221 tgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42533662 tgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctatccattttatg 42533576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 44432793 - 44432656
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44432793 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttac 44432694  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  44432693 catttatgctttacatgtctgattctacccaatttatg 44432656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 5274403 - 5274266
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  5274403 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatattac 5274304  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||||||||||||||||||||||| || ||||||    
T  5274303 catttatgctttacatgcctgattctacgcaatttatg 5274266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 22047141 - 22047278
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  22047141 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 22047240  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  22047241 catttatgctttacatgcctgattctacccaatttatg 22047278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 4839904 - 4839767
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||| || |||||||||||||||||||||| | ||||||    
T  4839904 agtgctcaaaagtaacatatttcatgtgttaacttaggcgaattagtgatttgttttgcaagttatctgaggaaaagctaccatttgagtgcaattttac 4839805  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  4839804 catttatgctttacatgcctgattctacccaatttatg 4839767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 178 - 307
Target Start/End: Complemental strand, 46692898 - 46692769
Alignment:
Q  178 aaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttaccatttatg 277  Q
    ||||||| |||||||||||| |||  ||||||  ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||    
T  46692898 aaagtaatatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtatttataccatttatg 46692799  T
Q  278 ctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||| ||||||    
T  46692798 ctttacatgcctgattctacccaatttatg 46692769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 170 - 306
Target Start/End: Original strand, 55326168 - 55326304
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||||||||  |||  |||| |  ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |||    
T  55326168 agtgctcaaaagtaacatattttatgtattaatctaggaagtttagtgacttgttctgcaagttatctaaggaaaaactaccatttgagtgtatttgtac 55326267  T
Q  270 catttatgctttacatgcctgattctacccattttat 306  Q
    |||||| |||||||||||||||||||||||| |||||    
T  55326268 catttacgctttacatgcctgattctacccaatttat 55326304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 289
Target Start/End: Original strand, 6639362 - 6639481
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    ||||||||| ||||| |||||| ||||| ||| |||||||  || |||||||||||||||||||| |||||||||||||||||  |   |||| ||||||    
T  6639362 agtgctcaagagtaatatatttcatgtgttaatttaggcattttggtgacttgttttgcaagttatctaaggaaaagctaccaacttgttgtaattttac 6639461  T
Q  270 catttatgctttacatgcct 289  Q
    ||||||||||||||||||||    
T  6639462 catttatgctttacatgcct 6639481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 19248550 - 19248428
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||| |||| |||||||||| |||  ||||||  |||||| |||||||||||||||| |||||||||| ||| || |||  || ||||||||    
T  19248550 agtgctcaaaagcaacacattttatgtgttaatctaggcactttagtggcttgttttgcaagttatctaaggaaaatctatcaattg-ttgcatttttac 19248452  T
Q  270 catttatgctttacatgcctgatt 293  Q
    ||||||||||||||||||||||||    
T  19248451 catttatgctttacatgcctgatt 19248428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 291
Target Start/End: Original strand, 26069075 - 26069195
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctacc-atttgagtgtattttta 268  Q
    |||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| ||||||||| ||||| |||||||||| | ||  ||||  |||||    
T  26069075 agtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaagaaaaagctacctaatt--gtgttatttta 26069172  T
Q  269 ccatttatgctttacatgcctga 291  Q
    |||||||||||||||||||||||    
T  26069173 ccatttatgctttacatgcctga 26069195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 300
Target Start/End: Original strand, 8894231 - 8894360
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    ||||||||||| | | |||||| ||||| ||| |||||||  ||||||||||||||||||||||| |||||| |||||||| |||||| |||| || | |    
T  8894231 agtgctcaaaactgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggtaaagctacaatttga-tgtaattatgc 8894329  T
Q  270 catttatgctttacatgcctgattctaccca 300  Q
    |||||||||||||  ||||| ||| ||||||    
T  8894330 catttatgctttatgtgccttattgtaccca 8894360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 281
Target Start/End: Complemental strand, 35417556 - 35417446
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    ||||||||||||||  || ||| ||||| ||| | |||||  ||||||||||||||||||| ||| |||||||||||| | ||||||  |||| ||| ||    
T  35417556 agtgctcaaaagtactatctttcatgtgttaaataaggcattttagtgacttgttttgcaaattatctaaggaaaagcaatcatttg-ttgtaatttgac 35417458  T
Q  270 catttatgcttt 281  Q
    ||||||||||||    
T  35417457 catttatgcttt 35417446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 281
Target Start/End: Complemental strand, 40996403 - 40996292
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttg-caagttacctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||  || ||| ||||| |||  |||| |  |||||||||||||||| ||||||| |||||||||||| | ||||| | |||| ||| |    
T  40996403 agtgctcaaaagtattatctttcatgtgttaaaataggtattttagtgacttgttttgtcaagttatctaaggaaaagcaatcattt-attgtaatttga 40996305  T
Q  269 ccatttatgcttt 281  Q
    |||||||||||||    
T  40996304 ccatttatgcttt 40996292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 30219155 - 30219079
Alignment:
Q  212 ttagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcct 289  Q
    ||||||||||||| ||||||||| |||||||||| | | || |||  |||| ||| || |||||||||||||||||||    
T  30219155 ttagtgacttgttctgcaagttatctaaggaaaaacaatcaattg-ttgtaatttcacaatttatgctttacatgcct 30219079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 24835153 - 24835290
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24835153 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttac 24835252  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  24835253 catttatgctttacatgcctgattctacccaatttatg 24835290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 11724043 - 11723906
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  11724043 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 11723944  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  11723943 catttatgctttacatgcctgattctacccaatttatg 11723906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 14343886 - 14344023
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  14343886 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 14343985  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  14343986 catttatgctttacatgcctgattctacccaatttatg 14344023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 30607948 - 30607811
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  30607948 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatattac 30607849  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  30607848 catttatgctttacatgcctgattctacccaatttatg 30607811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 33434001 - 33434138
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  33434001 agtgcttaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgtatttttac 33434100  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  33434101 catttatgctttacatgcctgattctacccaatttatg 33434138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 7314379 - 7314516
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  7314379 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 7314478  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  7314479 catttatgctttacatgcctgattctaccaaatttatg 7314516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 9403714 - 9403851
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  9403714 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatattac 9403813  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
     |||||||||||||||||||||||||||||| ||||||    
T  9403814 tatttatgctttacatgcctgattctacccaatttatg 9403851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 34455588 - 34455725
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  34455588 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatattac 34455687  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  34455688 catttatgctttacatgcccgattctacccaatttatg 34455725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 170 - 299
Target Start/End: Original strand, 11766150 - 11766279
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  11766150 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 11766249  T
Q  270 catttatgctttacatgcctgattctaccc 299  Q
    ||||||||||||||||| ||||||||||||    
T  11766250 catttatgctttacatgtctgattctaccc 11766279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 170 - 306
Target Start/End: Original strand, 6269310 - 6269447
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgta-ttttta 268  Q
    |||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||    
T  6269310 agtgctcaaaagtaacatatttcatgtgttaacctaggcaatttagtgacttgttttgcaagttatctaaggaaaatctaccatttgagtgtatttttta 6269409  T
Q  269 ccatttatgctttacatgcctgattctacccattttat 306  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  6269410 ccatttatgctttacatgtctgattctacccaatttat 6269447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 34870436 - 34870300
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||||||||| |||  ||||||  |||||| |||||||||||||||| |||||||||| ||| || |||  || ||||||||    
T  34870436 agtgctcaaaagtaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaaactatcaattg-ttgcatttttac 34870338  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||| |||||| | |||| ||||||    
T  34870337 catttatgctttacatgtctgattttgcccaatttatg 34870300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 174 - 286
Target Start/End: Original strand, 30422188 - 30422299
Alignment:
Q  174 ctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttaccatt 273  Q
    ||||||||||| |||||| ||||| ||| |||||||  ||||||||||||||||||||||| |||||||||| ||||||||| |  ||| |||| |||||    
T  30422188 ctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaaactaccattt-atcgtaattttgccatt 30422286  T
Q  274 tatgctttacatg 286  Q
    |||||||||||||    
T  30422287 tatgctttacatg 30422299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 42748310 - 42748256
Alignment:
Q  203 ttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttga 257  Q
    |||||||  ||||| |||||||||||||||||  |||||||||||||| ||||||    
T  42748310 ttaggcactttagttacttgttttgcaagttatttaaggaaaagctacaatttga 42748256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 29223108 - 29223245
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29223108 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttac 29223207  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  29223208 catttatgctttacatgcctgattctacccaatttatg 29223245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 29336407 - 29336544
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29336407 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttac 29336506  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  29336507 catttatgctttacatgcctgattctacccaatttatg 29336544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 8684208 - 8684070
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtat-tttta 268  Q
    ||||||||||||||| |||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||    
T  8684208 agtgctcaaaagtaaaatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccgtttgagtgtatttttta 8684109  T
Q  269 ccatttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  8684108 ccatttatgctttacatacctgattctacccaatttatg 8684070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 170 - 305
Target Start/End: Original strand, 32522389 - 32522515
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||||||||| ||| ||||         ||||||||||||||||||| |||||||||||||| ||||||||||||||| |||    
T  32522389 agtgctcaaaagtaacatattttatgtgttaatttag---------tgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtatttatac 32522479  T
Q  270 catttatgctttacatgcctgattctacccatttta 305  Q
    ||||||||||||||||||||||||||||||| ||||    
T  32522480 catttatgctttacatgcctgattctacccaattta 32522515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 36668606 - 36668470
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||| ||||||||||||||| |||  ||||||  |||||| |||||||||||||||| |||||||||||||| || |||  || ||||||||    
T  36668606 agtgctcaaaagcaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaagctatcaattg-ttgcatttttac 36668508  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||||||||||||||||||| | |||| ||||||    
T  36668507 catttatgctttacatgcctgattttgcccaatttatg 36668470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 29226734 - 29226794
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 230  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29226734 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29226794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 29340033 - 29340093
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 230  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29340033 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29340093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 29792577 - 29792636
Alignment:
Q  171 gtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 230  Q
    ||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| |||||    
T  29792577 gtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaa 29792636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 31757719 - 31757798
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttacctaaggaaaagct 248  Q
    ||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||| ||| |||||||||    
T  31757719 agtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 31757798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 27347441 - 27347578
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  27347441 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaattttac 27347540  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  27347541 catttatgctttacatgcctgattctatccaatttatg 27347578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 299
Target Start/End: Original strand, 3298196 - 3298325
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  3298196 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtttatttttac 3298295  T
Q  270 catttatgctttacatgcctgattctaccc 299  Q
    ||||||||||||||||| ||||||||||||    
T  3298296 catttatgctttacatgtctgattctaccc 3298325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 27353521 - 27353658
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||    
T  27353521 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgcaattttac 27353620  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27353621 catttatgctttacatgcctgattctacccaatttatg 27353658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 28926911 - 28926774
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| | ||||||    
T  28926911 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactttttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 28926812  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  28926811 catttatgctttacatgcctgattctacccaatttatg 28926774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 22179904 - 22180041
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||||    
T  22179904 agtgctcaaaagtaacatattttatgcgttaacttaggcaaattagtgacttgtttcgcaagttatctaaggaaaatctaccatttgagtgtaattttac 22180003  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||||||||||||||||||||||| || ||||||    
T  22180004 catttatgctttacatgcctgattctactcaatttatg 22180041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 8744135 - 8743998
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | |||     
T  8744135 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattattgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatattat 8744036  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
     |||||||||||||||||||||||||||||| ||||||    
T  8744035 tatttatgctttacatgcctgattctacccaatttatg 8743998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 9068934 - 9068797
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |  |||||    
T  9068934 agtgcccaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatccaaggaaaagctaccatttgagtgcaactttac 9068835  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  9068834 catttatgctttacatgcctgattctacccaatttatg 9068797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 36737627 - 36737491
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||| ||||||| ||||||||||||| |||  ||||||  || |||||||||| ||||||||| ||||||||| |||| || |||  ||||| | |||    
T  36737627 agtgctaaaaagtaccatattttatgtgttaatctaggcattttggtgacttgttctgcaagttatctaaggaaaggctatcaattgt-tgtatctatac 36737529  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  36737528 catttatgctttacatgcctgattctacccaatttatg 36737491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 170 - 300
Target Start/End: Original strand, 1606597 - 1606726
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    ||||||||||||||| |||||| ||||| ||| |||||||  ||||||||||||| ||||||||| ||||| |||||||  || |||  |||| ||||||    
T  1606597 agtgctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttctgcaagttatctaagaaaaagctttcaattg-ttgtacttttac 1606695  T
Q  270 catttatgctttacatgcctgattctaccca 300  Q
    |||||||| |||||||| |||||||||||||    
T  1606696 catttatgttttacatgtctgattctaccca 1606726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 16957902 - 16957972
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaag 240  Q
    |||||||||||||||||||||||||| | |||  |||||| |||||||||||||||||||||||| |||||    
T  16957902 agtgctcaaaagtaacatattttatgcgttaatctaggcatattagtgacttgttttgcaagttatctaag 16957972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 28369590 - 28369642
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttg 222  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  28369590 agtgctcaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttg 28369642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 281
Target Start/End: Original strand, 24040007 - 24040117
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    ||||||||||||||  || ||| ||||| |||  ||||||  |||||||||||||||| ||||||  ||||||||||| | ||||||  |||| ||| ||    
T  24040007 agtgctcaaaagtattatctttcatgtgttaaaataggcattttagtgacttgttttgtaagttatataaggaaaagcaatcatttg-ttgtaatttgac 24040105  T
Q  270 catttatgcttt 281  Q
    ||||||||||||    
T  24040106 catttatgcttt 24040117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 4435615 - 4435537
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagct 248  Q
    ||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||||||| ||| |||||||||    
T  4435615 agtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaagttatctatggaaaagct 4435537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 21687383 - 21687462
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttacctaaggaaaagct 248  Q
    ||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||| ||| |||||||||    
T  21687383 agtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21687462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 21691707 - 21691786
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttacctaaggaaaagct 248  Q
    ||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||| ||| |||||||||    
T  21691707 agtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21691786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 22817833 - 22817970
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22817833 agtgctcaaaagtaacatatttcaggtgttaacttaggcaaaatagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttac 22817932  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  22817933 catttatgctttacatgcctgattctacccaatttatg 22817970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 7143052 - 7143189
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  7143052 agtgctcaaaagtaacatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatattac 7143151  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  7143152 catttatgctttacatgcctgattctacccaatttatg 7143189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 10347073 - 10346936
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  10347073 agtgctcaaaagtaacatttttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 10346974  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  10346973 catttatgctttacatgcctgattctacccaatttatg 10346936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 23794488 - 23794625
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  23794488 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 23794587  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  23794588 catttattctttacatgcctgattctacccaatttatg 23794625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 299
Target Start/End: Complemental strand, 31159043 - 31158914
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  31159043 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 31158944  T
Q  270 catttatgctttacatgcctgattctaccc 299  Q
    ||||||||||||||||||||||||||||||    
T  31158943 catttatgctttacatgcctgattctaccc 31158914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 2630815 - 2630951
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  2630815 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 2630914  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  2630915 catttatgcttt-catgcctgattctacccaatttatg 2630951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 12183260 - 12183397
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| ||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12183260 agtgctcaaaagtaacatatttcatgtgttaacttatgtaaattagtgacctgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttac 12183359  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  12183360 catttatgcttcacatgcctgattctacccaatttatg 12183397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 22322651 - 22322514
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  22322651 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagcgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaattttac 22322552  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||||||||||| ||| |||||||||| ||||||    
T  22322551 catttatgctttacatacctaattctacccaatttatg 22322514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 19473027 - 19472890
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||| ||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||    
T  19473027 agtgcttaaaagtaacatatttcatgtgttaatttaggcaaattagtgacttattttgcaagttatctaaggaaaagctaccttttgagtgtatttttac 19472928  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  19472927 catttatgctttacatgcctaattctacccaatttatg 19472890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 45501399 - 45501261
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgactt-gttttgcaagttacctaaggaaaagctaccatttgagtgtattttta 268  Q
    |||||||||||||||||||||| |||||||||  ||||||| |||||||||| |||||| || ||| |||||||||||||| ||||||||||||||| ||    
T  45501399 agtgctcaaaagtaacatatttcatgtgctaatctaggcaatttagtgacttagttttgaaatttatctaaggaaaagctatcatttgagtgtatttata 45501300  T
Q  269 ccatttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  45501299 ccatttatgttttacatgcctgattctacccaatttatg 45501261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 2477075 - 2477212
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||| ||||||||||||||||||||| | |||| ||||||  ||||||||||||||||||| ||| ||||| ||||||||| | ||||||||||||||||    
T  2477075 agtgatcaaaagtaacatattttatgcgttaacctaggcattttagtgacttgttttgcaacttatctaagaaaaagctactaattgagtgtatttttac 2477174  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||| |||||||||||||||||||| | ||||||    
T  2477175 catttatgttttacatgcctgattctacctaatttatg 2477212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 2798308 - 2798171
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||| |||||| |||||||||||||||| |||  ||||||| ||||||||||||| ||||||||| |||||||||| | | ||||||||||||||| |||    
T  2798308 agtgttcaaaaataacatattttatgtgttaatctaggcaatttagtgacttgttctgcaagttatctaaggaaaaacaatcatttgagtgtatttatac 2798209  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||||||||||| |||||||||| ||| ||||||    
T  2798208 catttatgctttacatacctgattctatccaatttatg 2798171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 186 - 307
Target Start/End: Original strand, 31878032 - 31878153
Alignment:
Q  186 atattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacat 285  Q
    |||||||||||| |||  |||| || |||||||||| |  ||||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||    
T  31878032 atattttatgtgttaatataggtaatttagtgacttatcctgcaagttatctagggaaaagctatcatttgagtgtatttataccatttatgctttacat 31878131  T
Q  286 gcctgattctacccattttatg 307  Q
    ||||||||||||||| ||||||    
T  31878132 gcctgattctacccaatttatg 31878153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 31001455 - 31001376
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagcta 249  Q
    |||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| | ||||||| ||||| ||||||||    
T  31001455 agtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctccaagttatctaagaaaaagcta 31001376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 24169483 - 24169396
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttga 257  Q
    ||||||||||||| | |||||| ||||  ||  |||||||  ||||||| |||||||||||||||| |||||||||| ||| ||||||    
T  24169483 agtgctcaaaagtgatatatttcatgtattattttaggcactttagtgatttgttttgcaagttacttaaggaaaagttacaatttga 24169396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 304
Target Start/End: Original strand, 29863923 - 29864054
Alignment:
Q  172 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaa-ggaaaagctaccatttgagtgtatttttacc 270  Q
    ||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||| |||| ||| ||||||||||| |||||| |  | || | ||    
T  29863923 tgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaaattacttaagggaaaagctacaatttga-tacaattatgcc 29864021  T
Q  271 atttatgctttacatgcctgattctacccatttt 304  Q
    |||||||||||| |||||| ||||||||| ||||    
T  29864022 atttatgcttta-atgccttattctacccctttt 29864054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 8139920 - 8139848
Alignment:
Q  178 aaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctac 250  Q
    ||||||| |||||| ||||| ||  |||||||  |||||||||| ||||||| |||| |||||||||||||||    
T  8139920 aaagtaatatatttcatgtgttattttaggcactttagtgacttattttgcaggttatctaaggaaaagctac 8139848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 20403080 - 20403168
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaa-ggaaaagctaccatttga 257  Q
    ||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||| |||| ||| ||||||||||| ||||||    
T  20403080 agtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaaattacttaagggaaaagctacaatttga 20403168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 8e-58; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 26511268 - 26511131
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||    
T  26511268 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataattttac 26511169  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  26511168 catttatgctttacatgcctgattctacccaatttatg 26511131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 26516384 - 26516247
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||    
T  26516384 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataattttac 26516285  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  26516284 catttatgctttacatgcctgattctacccaatttatg 26516247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 170 - 299
Target Start/End: Original strand, 3538442 - 3538571
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  3538442 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 3538541  T
Q  270 catttatgctttacatgcctgattctaccc 299  Q
    ||||||||||||||||||||||||||||||    
T  3538542 catttatgctttacatgcctgattctaccc 3538571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 9934752 - 9934615
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  9934752 agtgcttaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttgttttgcaagttatctaaggaaaaactaccatttgagtgtatttttac 9934653  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  9934652 catttatgctttacatgcctgattctatccaatttatg 9934615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 34005899 - 34006036
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||||    
T  34005899 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaatgctaccatttgagtgcaattttac 34005998  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  34005999 catttatgctttacatgcctgattctatccaatttatg 34006036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 24161991 - 24161855
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtat-tttta 268  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||| |||||    
T  24161991 agtgctcaaaagtaacat--tttatgtgttaacttaggcaaattagagacttgttttgcaagttatataaggaaaagctaccatttgagtgtatttttta 24161894  T
Q  269 ccatttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  24161893 ccatttatgctttacatgcctgattctatccaatttatg 24161855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 172 - 297
Target Start/End: Original strand, 26603622 - 26603746
Alignment:
Q  172 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttacca 271  Q
    ||||||||||| | |||||| ||||| ||| |||||||  ||||||||||||||||||||||| ||||||||||  ||||| |||  |||| ||||||||    
T  26603622 tgctcaaaagtgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaatgtaccaattg-ttgtacttttacca 26603720  T
Q  272 tttatgctttacatgcctgattctac 297  Q
    ||||||||||||||||||||||||||    
T  26603721 tttatgctttacatgcctgattctac 26603746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 31131281 - 31131417
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||| ||||||||||||||||||||| |||  ||||||  ||||||||||||||||||||||| |||||||||| ||| || |||  ||||||| |||    
T  31131281 agtgcttaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaatctatcaattg-ttgtatttatac 31131379  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||||||||  || || ||||| |||| ||||||    
T  31131380 catttatgctttatgtgtctaattctgcccaatttatg 31131417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 15641761 - 15641855
Alignment:
Q  212 ttagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||| ||||||||| ||||||||||||||||| |||  |||| ||||||||||||||||||||||||||||||| | || |||||||    
T  15641761 ttagtgacttgttctgcaagttatctaaggaaaagctaccaattg-ttgtacttttaccatttatgctttacatgcctgattccaacccttttatg 15641855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 2298291 - 2298378
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttga 257  Q
    |||| |||||||| | |||||| ||||| ||  |||| ||  ||||||||||||||||||||||| |||||||||| |||| ||||||    
T  2298291 agtgttcaaaagtgatatatttcatgtgttattttagacactttagtgacttgttttgcaagttatctaaggaaaaactacaatttga 2298378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 304
Target Start/End: Complemental strand, 5671803 - 5671670
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    ||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||| ||| ||||||||| | |||| | || ||||  ||    
T  5671803 agtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcatttacac 5671705  T
Q  270 catttatgctttacatgcctgattctacccatttt 304  Q
    ||||||||||| | |||||| | ||||||| ||||    
T  5671704 catttatgcttcatatgccttactctacccttttt 5671670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 3587794 - 3587931
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  3587794 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 3587893  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  3587894 catttatgctttacatgcctgattctacccaatttatg 3587931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 27031554 - 27031417
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  27031554 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatattac 27031455  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27031454 catttatgctttacatgcctgattctacccaatttatg 27031417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 170 - 298
Target Start/End: Complemental strand, 10407717 - 10407589
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  10407717 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaattttac 10407618  T
Q  270 catttatgctttacatgcctgattctacc 298  Q
    |||||||||||||||||||||||||||||    
T  10407617 catttatgctttacatgcctgattctacc 10407589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 4755625 - 4755488
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  4755625 agtgctcaaaagtaacatatttcatgtgttaaattaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgtatttttac 4755526  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  4755525 catttatgccttacatgcctgattctacccaatttatg 4755488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 52045650 - 52045513
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  52045650 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaatttgtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaattttac 52045551  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  52045550 catttatgctttacatgcctgattctagccaatttatg 52045513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 52308760 - 52308623
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  52308760 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgctttgcaagttatctaaggaaaagctaccatttgagtgtaattttac 52308661  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  52308660 catttatgctttacatgtctgattctacccaatttatg 52308623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 7653987 - 7653851
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  7653987 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 7653888  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  7653887 catttatgcttt-catgcctgattctacccaatttatg 7653851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 8614919 - 8615055
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||    
T  8614919 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaattttac 8615017  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  8615018 catttatgctttacatgcctgattctacccaatttatg 8615055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 155 - 303
Target Start/End: Complemental strand, 36470211 - 36470063
Alignment:
Q  155 gcttgatgcttgaagagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatt 254  Q
    |||||||| ||||  |||||||||||||| ||||||| ||||| |||  ||||||| ||||||| ||||||||||||||| | |||||||||||||||||    
T  36470211 gcttgatgtttgataagtgctcaaaagtaccatatttaatgtgttaatctaggcaatttagtgatttgttttgcaagttatccaaggaaaagctaccatt 36470112  T
Q  255 tgagtgtatttttaccatttatgctttacatgcctgattctacccattt 303  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  36470111 tgagtgtatttataccaattatgctttacatgcctgattctaccaattt 36470063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 177 - 274
Target Start/End: Complemental strand, 11263694 - 11263597
Alignment:
Q  177 aaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttaccattt 274  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| || |||| ||||||||||||||||||||||||    
T  11263694 aaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggtaacgctagcatttgagtgtatttttaccattt 11263597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 292
Target Start/End: Original strand, 33247303 - 33247424
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| ||||||||| ||||||||||||||| |  |  ||||  ||||||    
T  33247303 agtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaaggaaaagctactaaat-tgtgttcttttac 33247401  T
Q  270 catttatgctttacatgcctgat 292  Q
    |||||||||||||||||||||||    
T  33247402 catttatgctttacatgcctgat 33247424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 36981132 - 36981208
Alignment:
Q  165 tgaagagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaagg 241  Q
    |||| ||||||||||||| | ||||||| |||| ||| ||| |||  ||||||| ||||||||||| |||| |||||    
T  36981132 tgaatagtgctcaaaagtgatatattttttgtgttaatttaagcattttagtgatttgttttgcaaattacttaagg 36981208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 37006571 - 37006647
Alignment:
Q  165 tgaagagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaagg 241  Q
    |||| ||||||||||||| | ||||||| |||| ||| ||| |||  ||||||| ||||||||||| |||| |||||    
T  37006571 tgaatagtgctcaaaagtgatatattttttgtgttaatttaagcattttagtgatttgttttgcaaattacttaagg 37006647  T

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Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 16833517 - 16833380
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  16833517 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgattgtatttttac 16833418  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  16833417 catttatgctttacatgcctgattctatccaatttatg 16833380  T

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Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 38122804 - 38122667
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  38122804 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatattac 38122705  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  38122704 catttatgctttacatgcctgattctacccaatttatg 38122667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 12168943 - 12168806
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  12168943 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 12168844  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  12168843 catttatgctttacatgcctgattctacccaatttatg 12168806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 33492962 - 33492826
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  33492962 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 33492863  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  33492862 catttatgcttt-catgcctgattctacccaatttatg 33492826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 172 - 307
Target Start/End: Complemental strand, 13218800 - 13218665
Alignment:
Q  172 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttacca 271  Q
    ||||||||| |||||||||| ||||| |||  |||| || |||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||    
T  13218800 tgctcaaaactaacatatttcatgtgttaatctaggtaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtatttatacca 13218701  T
Q  272 tttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||| ||||||    
T  13218700 tttatgctttacatgcctgattctacccaatttatg 13218665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 39453351 - 39453462
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    ||||||||||||||| |||| ||||||| ||| ||||| |  ||||||||||||||||||||||| |||||||||| ||||||||||  |||| |||| |    
T  39453351 agtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttgc 39453449  T
Q  270 catttatgcttta 282  Q
    |||||||||||||    
T  39453450 catttatgcttta 39453462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 25242411 - 25242528
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    ||||||||||| ||||||||| |||||| ||| |||||||  ||| ||||||||| ||||||||| ||||||||||||||| |||   |  | |||||||    
T  25242411 agtgctcaaaactaacatattctatgtgttaatttaggcattttaatgacttgttctgcaagttatctaaggaaaagctactattgttgcatttttttac 25242510  T
Q  270 catttatgctttacatgc 287  Q
    ||||||||||||| ||||    
T  25242511 catttatgctttaaatgc 25242528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 13829599 - 13829725
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||| |||| |||||| ||||| ||| ||| |||  ||||| ||||||  | ||||||| || |||||||||||||| || | |||| ||||||    
T  13829599 agtgctcaaaggtaatatatttcatgtgttaaattatgcattttagtaacttgtcctacaagttatctgaggaaaagctaccaatt-attgtacttttac 13829697  T
Q  270 catttatgctttacatgcctgattctac 297  Q
     |||| ||||||||||||||||||||||    
T  13829698 tatttgtgctttacatgcctgattctac 13829725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 281
Target Start/End: Original strand, 16129005 - 16129115
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||| ||| ||| ||||| |||  ||||||  ||| ||||||||||||||||||| |||||||||||| | ||||||  |||| ||| ||    
T  16129005 agtgctcaaaagtaccatctttcatgtgttaaaataggcattttaatgacttgttttgcaagttatctaaggaaaagcaatcatttg-ttgtaatttgac 16129103  T
Q  270 catttatgcttt 281  Q
    ||||||||||||    
T  16129104 catttatgcttt 16129115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 299
Target Start/End: Original strand, 174039 - 174168
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  174039 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaattttac 174138  T
Q  270 catttatgctttacatgcctgattctaccc 299  Q
    ||||||||||||||||||||||||||||||    
T  174139 catttatgctttacatgcctgattctaccc 174168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 170 - 299
Target Start/End: Original strand, 185197 - 185326
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||  |||||||||||||||||||||||| | ||||||    
T  185197 agtgctcaaaagtaacatatttcatgtgttaacttaggaaaattaatgacttgttttgcaagttatataaggaaaagctaccatttgagtgcaattttac 185296  T
Q  270 catttatgctttacatgcctgattctaccc 299  Q
    ||||||||||||||||||||||||||||||    
T  185297 catttatgctttacatgcctgattctaccc 185326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 354507 - 354370
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  354507 agtgctcaaaagtaacatatttcatgtgttaacttagacaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatattac 354408  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  354407 catttatgctttacatgcctgattctacccaatttatg 354370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 960 - 1096
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||    
T  960 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaattttac 1058  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  1059 catttatgctttacatgcctgattctacccaatttatg 1096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 117398 - 117261
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||| ||||| |||  ||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||| |||    
T  117398 agtgctcaaaagtaacatatttcatgtgttaatctaggcaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtgtttatac 117299  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  117298 catttatgctttacatgtctgattctacccaatttatg 117261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 17240 - 17103
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||||||||| |||| |||||   ||||||||||||||||||||||| |||||||||||| || |  ||| ||||||| |||    
T  17240 agtgctcaaaagtaacatattttatgtgttaacctaggcttgttagtgacttgttttgcaagttatctaaggaaaagccactaagtgattgtatttgtac 17141  T
Q  270 catttatgctttacatgcctgattctacccattttatg 307  Q
    |||||||||||||| ||| |||||||||||| ||||||    
T  17140 catttatgctttacgtgcttgattctacccaatttatg 17103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 80007 - 79922
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccattt 255  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  80007 agtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccattt 79922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 170 - 293
Target Start/End: Original strand, 1852 - 1974
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    |||||||||||||||||||||||||||| ||| |||||||  ||||| ||||||| ||||||||| |||||||||||||||||  |  ||||  ||||||    
T  1852 agtgctcaaaagtaacatattttatgtgttaatttaggcattttagttacttgttctgcaagttatctaaggaaaagctaccaaat-tgtgttcttttac 1950  T
Q  270 catttatgctttacatgcctgatt 293  Q
    ||||||||||||||||||||||||    
T  1951 catttatgctttacatgcctgatt 1974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 297
Target Start/End: Complemental strand, 10323 - 10197
Alignment:
Q  170 agtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttacctaaggaaaagctaccatttgagtgtatttttac 269  Q
    ||||||||||||||| |||| ||||||| ||| ||||| |  ||||||||||||||||||||||| |||||||||| ||||||||||  |||| |||| |    
T  10323 agtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttgc 10225  T
Q  270 catttatgctttacatgcctgattctac 297  Q
    |||||||||||||  ||||| |||||||    
T  10224 catttatgctttatgtgccttattctac 10197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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