View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_149 (Length: 304)
Name: NF6867A_low_149
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_149 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 15265663 - 15265482
Alignment:
| Q |
8 |
attatactgaaatagggttttatgatatattaagaaaggctttaaggactacccttagtagcataattgatagaagaggaaataaaggtaatgaaattaa |
107 |
Q |
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| T |
15265663 |
attacactgaaatagggttttatgatgtattaagaaaggctttaaggactacccttaatagcataattgatagaagaggaaataaaggtaatgaaattaa |
15265564 |
T |
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| Q |
108 |
tgtaattgttacaacatttacgccacatcattttgaaggtgcttgggataaggctggtgcttgtccaaaaactaagccttat |
189 |
Q |
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| T |
15265563 |
tgtaattgttacaacatttacgccacatcattttgaaggtgcttgggataaggctggtgcttgtccaaaaactaagccttat |
15265482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 15257135 - 15256957
Alignment:
| Q |
11 |
atactgaaatagggttttatgatatattaagaaaggctttaaggactacccttagtagcataattgatagaagaggaaataaaggtaatgaaattaatgt |
110 |
Q |
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| T |
15257135 |
atactgaaattgggttttatgatgtattgagaaaggctttaagaactactcttaatagtataattgataggagaggaaataaaggtagtaaaattgatgt |
15257036 |
T |
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| Q |
111 |
aattgttacaacatttacgccacatcattttgaaggtgcttgggataaggctggtgcttgtccaaaaactaagccttat |
189 |
Q |
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| T |
15257035 |
actagttacaacattttcaccagctcattttgaaggtgaatgggataaagctggtgcttgtccaaagactaagccttat |
15256957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 189
Target Start/End: Complemental strand, 15287781 - 15287628
Alignment:
| Q |
36 |
attaagaaaggctttaaggactacccttagtagcataattgatagaagaggaaataaaggtaatgaaattaatgtaattgttacaacatttacgccacat |
135 |
Q |
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| T |
15287781 |
attaagaaaggctttgaggactacccttaatagtataattgagaggaaagttgctaaaggaaatagaatagatgtgattgttaaaacattttcacctgct |
15287682 |
T |
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| Q |
136 |
cattttgaaggtgcttgggataaggctggtgcttgtccaaaaactaagccttat |
189 |
Q |
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| T |
15287681 |
cattttgaaggtgattgggataaggctggtacttgttcaaagactaagccttat |
15287628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 15265417 - 15265372
Alignment:
| Q |
254 |
tggtggctgctaaagccaaaggcaatgaatttggaaggttaagatt |
299 |
Q |
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| T |
15265417 |
tggtggctgctaaagccaaaggcaatgaatttggaaggttaagatt |
15265372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 15284141 - 15284178
Alignment:
| Q |
40 |
agaaaggctttaaggactacccttagtagcataattga |
77 |
Q |
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| T |
15284141 |
agaaaggctttaaggactacccttaatagcataattga |
15284178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 44248419 - 44248382
Alignment:
| Q |
40 |
agaaaggctttaaggactacccttagtagcataattga |
77 |
Q |
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| T |
44248419 |
agaaaggctttaaggactacccttaatagcataattga |
44248382 |
T |
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