View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_150 (Length: 301)
Name: NF6867A_low_150
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_150 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 49086299 - 49086584
Alignment:
| Q |
11 |
aatgaaggtgtttgcttgctcctaaattccatttgaagtatgaacaattttgctctctttgcaaataaataaatggtgtaaaaattgaatgtgacgtgtt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49086299 |
aatgaaggtgtttgcttgctcctaaattccatttgaagtatgaacaattttgctctctttgcaaataaataaatggtgtaaaaattgaatgtgacgtgtt |
49086398 |
T |
|
| Q |
111 |
gtgggatctgtcgaagcatgagaaccaaacatgtgtagaactatactaaacacacataatcaatagtgagcaaaccaattttcattgaatgcagaaactg |
210 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
49086399 |
gtgggatctggcgaagcatgagaaccaaacatgtgtagaactatactaaacacacataatcaatagtgagcaaaccaattttcattgcatgcagaaactg |
49086498 |
T |
|
| Q |
211 |
ttggttttataagtctataagtttatccaaatgtcggtgaaacgactcgatctaagccacgtctccttcattccattgtcccttct |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49086499 |
ttggttttataagtctataagtttatccaaatgtcggtgaaacgacccgatctaagccacgtctccttcattccattgtcccttct |
49086584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University