View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_153 (Length: 299)
Name: NF6867A_low_153
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_153 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 136 - 287
Target Start/End: Complemental strand, 25933416 - 25933262
Alignment:
| Q |
136 |
ttgtatgttaaattaatcatttttcaagaacaaacc---attattgtgttttgatgttaactttctgatttttagagaaagggcgttcaacttagtttaa |
232 |
Q |
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| T |
25933416 |
ttgtatgttaaattaatcatttttcaagaacaaaccgtaattattgtattttgatgttaactttctgattttcagagaaagggcgttcaacttagtttaa |
25933317 |
T |
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| Q |
233 |
taaaaacgacaacaatcaaacattattccatctccttgactatgagacggatatt |
287 |
Q |
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| T |
25933316 |
taaaaacgacaacaatcaaacattattccatctccttgactatgagacggatatt |
25933262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 25933521 - 25933485
Alignment:
| Q |
31 |
gtataataactttatgcatggttgttccaagatttgt |
67 |
Q |
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| T |
25933521 |
gtataataactttatgcatggttgttcaaagatttgt |
25933485 |
T |
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