View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_155 (Length: 298)

Name: NF6867A_low_155
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_155
NF6867A_low_155
[»] scaffold0428 (3 HSPs)
scaffold0428 (7-286)||(2315-2594)
scaffold0428 (7-232)||(15059-15278)
scaffold0428 (107-233)||(13771-13896)
[»] chr6 (12 HSPs)
chr6 (7-286)||(33258194-33258473)
chr6 (12-286)||(33414568-33414840)
chr6 (64-262)||(31564920-31565117)
chr6 (89-286)||(33269541-33269740)
chr6 (7-156)||(33293102-33293251)
chr6 (12-263)||(33395074-33395326)
chr6 (166-265)||(33384049-33384148)
chr6 (7-232)||(33278975-33279194)
chr6 (18-110)||(28872999-28873091)
chr6 (107-245)||(33406912-33407049)
chr6 (107-233)||(33280357-33280482)
chr6 (228-265)||(33293041-33293078)
[»] chr2 (1 HSPs)
chr2 (7-265)||(17447703-17447961)


Alignment Details
Target: scaffold0428 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 2594 - 2315
Alignment:
Q  7 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2594 aaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 2495  T
Q  107 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2494 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 2395  T
Q  207 gactttgttggcagaagtgagaaatttaaggagttggttaacgatcttgcaatgcaagtagctttttggtccacaggttc 286  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2394 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 2315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 15059 - 15278
Alignment:
Q  7 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 106  Q
    |||| |||| |||| |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| |||     
T  15059 aaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatca 15157  T
Q  107 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 206  Q
    ||||| ||||||||||| |  |||  |    |||||||||| |||||||| || || ||||||||||||  |||||||||||||||| ||| ||||||||    
T  15158 gctgacaagaaatccggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaacc 15252  T
Q  207 gactttgttggcagaagtgagaaatt 232  Q
    ||||||| |||||||||| |||||||    
T  15253 gactttgatggcagaagttagaaatt 15278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 13771 - 13896
Alignment:
Q  107 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 206  Q
    ||||| ||||||||||| ||| ||  ||  |||||| ||||| |||| || || || |||||||| ||||||| ||||| ||||||| ||| |||| ||     
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtaccta-cattcacgattcacgcattggttttctatttgaagttaactgtgatact 13869  T
Q  207 gactttgttggcagaagtgagaaattt 233  Q
    |||||| ||||||||||||||||||||    
T  13870 gacttttttggcagaagtgagaaattt 13896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 33258473 - 33258194
Alignment:
Q  7 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258473 aaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 33258374  T
Q  107 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258373 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 33258274  T
Q  207 gactttgttggcagaagtgagaaatttaaggagttggttaacgatcttgcaatgcaagtagctttttggtccacaggttc 286  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33258273 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 33258194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 33414840 - 33414568
Alignment:
Q  12 gtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctga 111  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  33414840 gtgcagggatgatggactgtaagaaagctcttgctgaaacggaaggcgatcttgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctga 33414741  T
Q  112 taagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactt 211  Q
    |||||||||||| ||||||||||  |||||||||||||||||||| || || |||| |||  |||||||||||||||||||||||| ||||||| |||||    
T  33414740 taagaaatccggaagactagcagctgaaggaagaatcggtacata-cattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactt 33414642  T
Q  212 tgttggcagaagtgagaaatttaaggagttggttaacgatcttgcaatgcaagtagctttttggtccacaggttc 286  Q
    ||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |||  || ||||||||||||    
T  33414641 tgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggttc 33414568  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 64 - 262
Target Start/End: Original strand, 31564920 - 31565117
Alignment:
Q  64 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 163  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  |||||||||||||||||||| || ||     
T  31564920 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacata-cattca 31565018  T
Q  164 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttaacgatcttgcaatgca 262  Q
    |||||||| |||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||||||| | ||||||||||||||    
T  31565019 cgattcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 89 - 286
Target Start/End: Complemental strand, 33269740 - 33269541
Alignment:
Q  89 aaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatat---cactcgcgattcacacattggtgttcta 185  Q
    ||||||||||||||||||||||||||||| || |  ||||||||||  |||| ||||||||||||||||   || || | || ||  ||| |||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  186 attgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttaacgatcttgcaatgcaagtagctttttggtccacaggtt 285  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||| |||  || |||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggtt 33269542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 33293251 - 33293102
Alignment:
Q  7 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 106  Q
    |||| |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  | ||||||| ||||  |||||||||||||||| |    
T  33293251 aaccggtgctgggatgatggactgtaagaaagctcatgctgaaacagaaggtgatcttgaaaaggtgaaagcatacctcagaaaaaagggtctctcattc 33293152  T
Q  107 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacata 156  Q
    ||||||||||||||| | ||||||||||  ||||||||||| ||||||||    
T  33293151 gctgataagaaatccagaagactagcagctgaaggaagaattggtacata 33293102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 33395326 - 33395074
Alignment:
Q  12 gtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctga 111  Q
    |||| ||||| |||||||||||||||||    ||||||||  ||||||||||||||||| | ||| |||| || |  | ||||||||||||||| |||||    
T  33395326 gtgctgggattatggactgtaagaaagccttagccgaaactaaaggtgatcttgaaaaggcccaatcataccttagaacaaagggtctctcatcagctga 33395227  T
Q  112 taagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactt 211  Q
     ||||||||||| || |||||||  |||||||||||||||| ||| || |  |||| ||| |||   |||||| |||||||||||| |||||||||||||    
T  33395226 caagaaatccggtaggctagcagctgaaggaagaatcggtaaata-cattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactt 33395128  T
Q  212 tgttgg--cagaagtgagaaatttaaggagttggttaacgatcttgcaatgcaa 263  Q
    ||||||  ||||||||| | ||| ||||||||||||   |||||| ||||||||    
T  33395127 tgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaa 33395074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 33384148 - 33384049
Alignment:
Q  166 attcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttaacgatcttgcaatgcaagt 265  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||||||||||    
T  33384148 attcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgcaatgcaagt 33384049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 33279194 - 33278975
Alignment:
Q  7 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 106  Q
    |||| |||| |||| |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| |||     
T  33279194 aaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatca 33279096  T
Q  107 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 206  Q
    ||||| ||||||||||| |  |||  |    |||||||||| |||||||| || || ||||||||||||  |||||||||||||||| ||| ||||||||    
T  33279095 gctgacaagaaatccggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaacc 33279001  T
Q  207 gactttgttggcagaagtgagaaatt 232  Q
    ||||||| |||||||||| |||||||    
T  33279000 gactttgatggcagaagttagaaatt 33278975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 28872999 - 28873091
Alignment:
Q  18 ggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctg 110  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||| || ||||||| ||||   |||||||||||||||| ||||    
T  28872999 ggatgatggactgtaagaaagcccttgccgaaacagaaggtgatcttgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 245
Target Start/End: Complemental strand, 33407049 - 33406912
Alignment:
Q  107 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 206  Q
    ||||||||||||||| | ||||||||||  || |||| || |||||||||| | |  | ||| |  |||| ||||| |||||| |||||||  |||||||    
T  33407049 gctgataagaaatccagaagactagcagccgatggaaaaaccggtacatat-attgacaatttatgcattagtgttataattgtagtgaactatgaaacc 33406951  T
Q  207 gactttgttggcagaagtgagaaatttaaggagttggtt 245  Q
    ||||||||||||||||||||| ||||  |||||||||||    
T  33406950 gactttgttggcagaagtgagcaattcgaggagttggtt 33406912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 233
Target Start/End: Complemental strand, 33280482 - 33280357
Alignment:
Q  107 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 206  Q
    ||||| ||||||||||| ||| ||  ||  |||||| ||||| |||| || || || |||||||| ||||||| ||||| ||||||| ||| |||| ||     
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtaccta-cattcacgattcacgcattggttttctatttgaagttaactgtgatact 33280384  T
Q  207 gactttgttggcagaagtgagaaattt 233  Q
    |||||| ||||||||||||||||||||    
T  33280383 gacttttttggcagaagtgagaaattt 33280357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 33293078 - 33293041
Alignment:
Q  228 aaatttaaggagttggttaacgatcttgcaatgcaagt 265  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagt 33293041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 17447703 - 17447961
Alignment:
Q  7 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaaggg-tctctcatc 105  Q
    |||| |||| ||||| ||||||||||||||||| | ||||||||| |||||||||||||||||| |||||||||| ||||  |||||||| |||||||||    
T  17447703 aaccggtgctgggattatggactgtaagaaagcccttgccgaaactgaaggtgatcttgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatc 17447802  T
Q  106 cgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaac 205  Q
    |||||||||||||||||| ||||| ||||  |||||||||||||||||||| || || |||| ||| ||| |||| |||||||||| |||||  ||||||    
T  17447803 cgctgataagaaatccggaagactggcagctgaaggaagaatcggtacata-cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaac 17447901  T
Q  206 cgactttgttggcagaagtgagaaatttaaggagttggttaacgatcttgcaatgcaagt 265  Q
    |||||||||||||||||| |||| ||| |||||||||||| | |||||||||||||||||    
T  17447902 cgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagt 17447961  T

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