View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_159 (Length: 296)
Name: NF6867A_low_159
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_159 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 287
Target Start/End: Complemental strand, 831 - 551
Alignment:
| Q |
7 |
catatgaaatgtccatgagacacagacaagcatggaaggtgaatgaagtaaaggagtaatgatttttataacttccatgatttgactgtcacaaacactc |
106 |
Q |
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| T |
831 |
catatgaaatgtccatgagacacagacaagcatggaaggtgaatgaagtaaaggagtaatgatttttataacttccatgatttgactgtcaccaacactt |
732 |
T |
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| Q |
107 |
cttttttaccgtaacttccctcttcttgcgcttttcccgtgccttccttccttccaaactgtaatcaaatcattactactgtaccaattttattttccat |
206 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
731 |
cttttttaccgtaacttcccccttcttgcgcttttcccgtgccttccttccttccaaaccgtaatcaaatcattactactgtaccaattttattttccat |
632 |
T |
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| Q |
207 |
caaataaattaaatacaaaaatcaaaaaccttagaaaggaatatgttccccctggttaatgttcagcaaatcgagtataat |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
631 |
aaaataaattaaatacaaaaatcaaaaaccttagaaaggaatatgttccccccggttaatgttcagcaaatcgaatataat |
551 |
T |
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Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 287
Target Start/End: Original strand, 42904055 - 42904335
Alignment:
| Q |
7 |
catatgaaatgtccatgagacacagacaagcatggaaggtgaatgaagtaaaggagtaatgatttttataacttccatgatttgactgtcacaaacactc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42904055 |
catatgaaatgtccatgagacacagacaagcatggaaggtgaatgaagtaaaggagtaatgatttttataacttccatgatttgactgtcaccaacactt |
42904154 |
T |
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| Q |
107 |
cttttttaccgtaacttccctcttcttgcgcttttcccgtgccttccttccttccaaactgtaatcaaatcattactactgtaccaattttattttccat |
206 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42904155 |
cttttttaccgtaacttcccccttcttgcgcttttcccgtgccttccttccttccaaaccgtaatcaaatcattactactgtaccaattttattttccat |
42904254 |
T |
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| Q |
207 |
caaataaattaaatacaaaaatcaaaaaccttagaaaggaatatgttccccctggttaatgttcagcaaatcgagtataat |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
42904255 |
aaaataaattaaatacaaaaatcaaaaaccttagaaaggaatatgttccccccggttaatgttcagcaaatcgaatataat |
42904335 |
T |
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