View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_16 (Length: 456)
Name: NF6867A_low_16
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 38 - 363
Target Start/End: Complemental strand, 28519269 - 28518944
Alignment:
| Q |
38 |
aacctgtgtccaaaagagcaacaactatgtcgcgttctaatttcaatcttctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtg |
137 |
Q |
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| T |
28519269 |
aacctgtgtccaaaagagcaacaactatgtcgcgttctaatttcaatcttctcttggcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtg |
28519170 |
T |
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| Q |
138 |
tagcttacggtattgatttttaaacaccaaaagtacttcatccatggctacacatgcnnnnnnnnnnnnnnnnnnnnnnncaatatctacaaattttaag |
237 |
Q |
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| T |
28519169 |
taacttacggtattgatttttaaacaccaaaagtacttcatccatggctacacatacaaaaaaatattcgaagaaaaaaacaatatctacaaattttaag |
28519070 |
T |
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| Q |
238 |
ctagagaaaaaattatacacaccagataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatgg |
337 |
Q |
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| T |
28519069 |
ctagagaaaaaattatacacaccagataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatgg |
28518970 |
T |
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| Q |
338 |
actctttggcttcatgataactaagt |
363 |
Q |
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| T |
28518969 |
actctttggcttcatgataactaagt |
28518944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 261 - 351
Target Start/End: Original strand, 12728863 - 12728953
Alignment:
| Q |
261 |
agataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatggactctttggcttca |
351 |
Q |
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| T |
12728863 |
agataacttgttggcttcatcctcggatagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggactctttggcttca |
12728953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 351
Target Start/End: Complemental strand, 34291236 - 34291144
Alignment:
| Q |
259 |
ccagataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatggactctttggcttca |
351 |
Q |
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| T |
34291236 |
ccagataacttgtttgcttcatcctcagacagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggattctttggcttca |
34291144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 12728763 - 12728832
Alignment:
| Q |
86 |
ttctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtgtagcttacggtattgatt |
155 |
Q |
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| T |
12728763 |
ttctcttagctgtcaatggtaatccaataaagtcccatgatcttgttgtgtgtagcttgcggtattgatt |
12728832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 34291425 - 34291362
Alignment:
| Q |
86 |
ttctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtgtagcttacggta |
149 |
Q |
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| T |
34291425 |
ttctcttagctgtcaaaggtaatccaataaaatcccatgatcttgttgtgtgtagcttgcggta |
34291362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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