View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_166 (Length: 291)
Name: NF6867A_low_166
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_166 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 24422341 - 24422064
Alignment:
| Q |
12 |
aaaatcaaatctcaaccgtccaatcctctcttaccatccatcttagccgtccaatttcttaaatgttattggtaacgcaccaacgccgttttctccaaat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24422341 |
aaaatcaaatctcaaccgtccaatcctctcttaccatccatcttagtcgtccaatttcttaaatgttattggtaacgcaccaacgc-gttttctccaaat |
24422243 |
T |
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| Q |
112 |
tttgtaacattctttctaacagaaaaaaccgtataactttctgtctctatctcttccattttcaaccttaatttctgtcacattaatgttcatcttcatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24422242 |
tttgtaacattctttctaacagaaaaaaccgtataactttctgtctctatctcttccattttcaaccttaatttctgtcacattaatgttcatcttcatt |
24422143 |
T |
|
| Q |
212 |
tcccatctttaattctctcaaaagtttccatcaaaagtctcaatcatcaaaatcttattaacatttttctccattattg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24422142 |
tcccatctttaattctctcaaaagtttccatcaaaagtctcaatcatcaaaatcttataaacatttttctccattattg |
24422064 |
T |
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