View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_17 (Length: 449)
Name: NF6867A_low_17
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Original strand, 41357123 - 41357546
Alignment:
| Q |
19 |
acaaagtggcgtcaaatagcggtatagcggagttatagcattatagcatagtggagtttgaatttactgctagttttcgtgatctgtgattgaaaatatt |
118 |
Q |
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| T |
41357123 |
acaaagtggcgtcaaatagcggtatagcggagttatagcattatagcatagtggagtttgaatttactgctagttttcgtgatctgtgattgaaaatatt |
41357222 |
T |
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| Q |
119 |
aattcaaactaatggagattcttgtttatctgattacaggagcgcaggatcatggatctatccgaggctaagttttttgtgaattctcttcgttccacat |
218 |
Q |
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| T |
41357223 |
aattcaaactaatggagattcttgtttatctgattacaggagcgcaggatcatggatctatccgaggctaagttttttgtgaattctcttcgttccacat |
41357322 |
T |
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| Q |
219 |
tgacatttctagaggttagtttgcgttgttcaattgtttacattctagctatgtgcttatttaacatcgtatg--------atgaatgacatatgaagca |
310 |
Q |
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| T |
41357323 |
tgacatttctagaggttagtttgcgttgttcaattgtttacattctagctatgtgcttatttaacatcatatgatgaatgaatgaatgacatatgaagca |
41357422 |
T |
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| Q |
311 |
tcatgctatgctatagagatctttagatattttcacaacctattattgtttgaagggattggcgatttagctcatgagctaacctttcatattcattttc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41357423 |
tcatgctatgctatagagatctttagatattttcacaacctattattgtttgaagggattggcgatttagctcatgagctaacctttcatattcattttc |
41357522 |
T |
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| Q |
411 |
tgtgtctgtgcttacttttcccat |
434 |
Q |
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| T |
41357523 |
tgtgtctgtgcttacttttcccat |
41357546 |
T |
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