View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_177 (Length: 287)
Name: NF6867A_low_177
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_177 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 28054914 - 28055201
Alignment:
| Q |
1 |
ttgttaatgtgtgcatgtggtatagcgtgcacccattgttataataggacacgtcatattgttagccaatcggtttgcgacacatatgtaagaagagaac |
100 |
Q |
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| T |
28054914 |
ttgttaatgtatgcatgtggtatagtgtgcacccattgttataataggacacgtcatattgttagccaatcggtttgtgacacatatgtaagaagagaac |
28055013 |
T |
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| Q |
101 |
agcagtcagcaagagaggagatgcggtatacttgagtttagacacaatattgccttacttactttcacagtaattattcttacataaaatattactaatt |
200 |
Q |
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| T |
28055014 |
agcagtcagcaagagaggagatgcggtatacttgagtttggacgcaatattgccttacttactttcaaagtaattattcttacataaaaaattactaatt |
28055113 |
T |
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| Q |
201 |
ttgttaacaagtttatccgatctatcgaaactgacaatgaagataaaaaattatttaaaaaattaaga-gagcacacttccgttaaga |
287 |
Q |
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| T |
28055114 |
ttgttaagaagtttatccgatctatccaaattgaaaatgaagataaaaaatcatttaaaaaattaagaggagcacacttctgttaaga |
28055201 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 40361500 - 40361406
Alignment:
| Q |
14 |
catgtggtatagcgtgcacccattgttataataggacacgtcatattgttagccaatcggtttgcgac----acatatgtaagaagagaacagca |
104 |
Q |
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|||||||||| |||||||||||||||||| ||||||| ||||||| ||| ||||| |||||| ||| |||||||||||||||||| |||| |
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| T |
40361500 |
catgtggtatgatgtgcacccattgttataacaggacacctcatattattacccaataggtttgtgacacatacatatgtaagaagagaatagca |
40361406 |
T |
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