View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_180 (Length: 285)
Name: NF6867A_low_180
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_180 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 41760483 - 41760655
Alignment:
| Q |
15 |
gaacaatatgccgaagcagaggaagaaatagaaattaaagcatgttctacagaagtcgaagaaaatattgaaaatataattttcatagacgaagaacaag |
114 |
Q |
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| T |
41760483 |
gaacaaaatgccgaagcagaggaagaaatagaaattaaagcatgttctacagaagtcgaagaaaatattgaaaatataattttcatagacgaagaacaag |
41760582 |
T |
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| Q |
115 |
gagaagaagttgaactatttgatgcacatgatgacgagggagataaattgtcggaaattgattacattctaat |
187 |
Q |
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| T |
41760583 |
gagaagaagttgaactatttgatgcacatgatgatgagggagataaattgtcggaaattgattacattctaat |
41760655 |
T |
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Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 41795385 - 41795456
Alignment:
| Q |
116 |
agaagaagttgaactatttgatgcacatgatgacgagggagataaattgtcggaaattgattacattctaat |
187 |
Q |
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||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||| |
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| T |
41795385 |
agaagaagttgaactatttgatgcagatgatgaagacggagataaagggtcggaaattgattacattctaat |
41795456 |
T |
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