View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_182 (Length: 285)
Name: NF6867A_low_182
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_182 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 23 - 267
Target Start/End: Original strand, 48416916 - 48417163
Alignment:
| Q |
23 |
cagcagtggagaaatttcatgatgaatagcatctctaatgtttgttggggagtttggatcgtaggagtaacaacggactaaatgctttaggatcattaga |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48416916 |
cagcagtggagaaatttcatgatgaatagcatctctaatgtttgttggggagtttagatcgtaggagtaacaacggactaaatgttttaggatcattaga |
48417015 |
T |
|
| Q |
123 |
gaatgagacacaacttttctacctaaaatcttaaaacattgagtatataactcgtctctttaataaatttatc---tttttatttatttataggcgacat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48417016 |
gaatgagacacaacttttctacctaaaatcttaaaacattgagtatataactcatctctttaataaatttatcttttttttatttatttataggcgacat |
48417115 |
T |
|
| Q |
220 |
ctgaattaatcacttacactttaaacgtaaaaataattcatcaaattt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48417116 |
ctgaattaatcacttacactttaaacgtaaaaataaatcatcaaattt |
48417163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University