View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_183 (Length: 285)

Name: NF6867A_low_183
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_183
NF6867A_low_183
[»] chr3 (27 HSPs)
chr3 (1-280)||(41985570-41985852)
chr3 (15-278)||(41980810-41981073)
chr3 (22-161)||(9494822-9494961)
chr3 (17-175)||(9407324-9407482)
chr3 (12-172)||(9425526-9425686)
chr3 (37-175)||(9343823-9343961)
chr3 (59-280)||(9448314-9448535)
chr3 (27-175)||(9329804-9329952)
chr3 (19-175)||(9617463-9617619)
chr3 (27-175)||(9336508-9336656)
chr3 (17-175)||(9397743-9397903)
chr3 (40-172)||(9655360-9655492)
chr3 (27-175)||(9695616-9695764)
chr3 (40-172)||(9646367-9646499)
chr3 (29-161)||(9352871-9353003)
chr3 (15-175)||(9432852-9433012)
chr3 (20-175)||(9416534-9416689)
chr3 (67-160)||(9340679-9340772)
chr3 (29-122)||(9377056-9377149)
chr3 (24-119)||(9614009-9614104)
chr3 (29-167)||(9626488-9626626)
chr3 (41-141)||(9441815-9441915)
chr3 (29-160)||(9347957-9348088)
chr3 (29-160)||(9369611-9369742)
chr3 (60-181)||(9756381-9756502)
chr3 (127-175)||(9686751-9686799)
chr3 (60-89)||(16011768-16011797)
[»] chr8 (3 HSPs)
chr8 (31-280)||(44688680-44688929)
chr8 (115-280)||(13170579-13170744)
chr8 (15-55)||(13170758-13170798)
[»] chr1 (8 HSPs)
chr1 (14-280)||(18991159-18991422)
chr1 (19-170)||(4428591-4428742)
chr1 (19-126)||(4439820-4439927)
chr1 (41-157)||(235195-235311)
chr1 (37-152)||(8814385-8814500)
chr1 (33-150)||(246841-246958)
chr1 (54-157)||(251412-251515)
chr1 (67-152)||(231589-231674)
[»] chr2 (1 HSPs)
chr2 (29-172)||(20694304-20694447)
[»] chr6 (7 HSPs)
chr6 (27-175)||(7041464-7041612)
chr6 (21-157)||(7046801-7046937)
chr6 (29-157)||(7025720-7025854)
chr6 (29-157)||(7012784-7012918)
chr6 (96-157)||(7029850-7029911)
chr6 (30-155)||(9159515-9159646)
chr6 (30-157)||(9170782-9170915)
[»] chr7 (2 HSPs)
chr7 (30-162)||(3695661-3695792)
chr7 (67-175)||(450111-450219)
[»] chr5 (2 HSPs)
chr5 (37-161)||(18571086-18571213)
chr5 (30-157)||(33541623-33541750)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 41985570 - 41985852
Alignment:
Q  1 tggtcaaaatcgttgaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattcccca 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985570 tggtcaaaatcgtagaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattcccca 41985669  T
Q  101 agaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41985670 agaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccggggaa 41985769  T
Q  201 accaaaacaatgagagtcatatatgtctactagcaacaac---tcacgctcactctctaccaggaatttcatgtcccctccat 280  Q
    ||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||    
T  41985770 accaaaacaatgagagtcatatatgtctactagcaacaactgatcaccctcactctctaccaggaatttcatgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 41980810 - 41981073
Alignment:
Q  15 gaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactcta 114  Q
    |||||||||| ||  |||||| | ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  41980810 gaatgcatcaccaacaaagataatacaatttcctttgacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactcta 41980909  T
Q  115 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 214  Q
    ||||||||||||| ||||||||||||||||||||| |||| | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||    
T  41980910 tcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgag 41981009  T
Q  215 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctcc 278  Q
    ||| ||| ||||| |||||||| || |||| |||||||||||||||||||||||  ||||||||    
T  41981010 agtgataaatgtccactagcaataattcaccctcactctctaccaggaatttcacatcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 9494961 - 9494822
Alignment:
Q  22 tcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccccta 121  Q
    |||||| |||||||||||||||| ||||||  |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9494961 tcatcaataaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatccccta 9494862  T
Q  122 aactcgccaacttgacccatttcttctccttctcatcaag 161  Q
    |||||  ||| || |||||| || ||||||||||||||||    
T  9494861 aactcatcaaattcacccatctcatctccttctcatcaag 9494822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 9407324 - 9407482
Alignment:
Q  17 atgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatc 116  Q
    ||||||||||| |||||| ||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||||    
T  9407324 atgcatcatcaataaagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatc 9407423  T
Q  117 ccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 175  Q
    ||||||||||  |||||| |||||| | || | |||||| |||||||| ||||||||||    
T  9407424 ccctaaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatcaa 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 9425526 - 9425686
Alignment:
Q  12 gttgaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaact 111  Q
    |||| ||||||||||  |||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||||| | |||||||||||     
T  9425526 gttgtatgcatcatcgataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaacc 9425625  T
Q  112 ctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 172  Q
    |||| || |||||||  |||||| |||||||| || | |||||| |||||||| |||||||    
T  9425626 ctattccttaaactcatcaacttcacccattttttattcttctcgtcaagtctaaacacat 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 9343823 - 9343961
Alignment:
Q  37 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 136  Q
    |||||||||||| |   |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |  ||||| |    
T  9343823 acacaatttcctctaggaacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttca 9343922  T
Q  137 cccatttcttctccttctcatcaagtctgaacacatcaa 175  Q
    |||| ||||||||| ||||||||||  | ||||||||||    
T  9343923 cccacttcttctccatctcatcaagcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 280
Target Start/End: Original strand, 9448314 - 9448535
Alignment:
Q  59 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 158  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| | |  ||||| ||||||||||||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  159 aagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctacc 258  Q
    |||  | |||||||||| | ||| | ||||   ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || ||     
T  9448414 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaact 9448513  T
Q  259 aggaatttcatgtcccctccat 280  Q
    | |||||| |||||||||||||    
T  9448514 aagaattttatgtcccctccat 9448535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 9329804 - 9329952
Alignment:
Q  27 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 126  Q
    |||| ||||||||||||| || ||| ||| |  ||| || ||||||||||||||||||||| ||||||||||||||||||||||  |||| |||||| ||    
T  9329804 actatagatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattc 9329903  T
Q  127 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 175  Q
    ||||||||||||||  | ||||| ||||||||||| || ||||||||||    
T  9329904 gccaacttgacccaccttttctctttctcatcaagcctaaacacatcaa 9329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 9617619 - 9617463
Alignment:
Q  19 gcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccc 118  Q
    ||||| ||| |||||||||||||||| ||||||  |||| ||||||| ||||||||||||||||| |||||||||||| | | ||||||||| |||||||    
T  9617619 gcatcgtcaataaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatccc 9617520  T
Q  119 ctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 175  Q
    ||||| |   |||||| |||||||||||||| ||||||| ||  |||||||| ||||    
T  9617519 ctaaatttttcaacttcacccatttcttctctttctcatgaaacctgaacacttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 9336508 - 9336656
Alignment:
Q  27 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 126  Q
    |||| ||||||||||||| || ||| ||| |  ||| || ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| ||    
T  9336508 actatagatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattc 9336607  T
Q  127 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 175  Q
    | || |||||||||  | ||||| ||||||||||| || ||||||||||    
T  9336608 gtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 9336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 9397743 - 9397903
Alignment:
Q  17 atgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatc 116  Q
    ||||||||||| |||||| ||||||||| |||||| ||||| |||||||| |||| ||||| ||||| |||||||||||| | |||||||| || |||||    
T  9397743 atgcatcatcaataaagacgacacaattccctttggcaacacacaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatc 9397842  T
Q  117 ccctaaactcgccaacttgaccca--tttcttctccttctcatcaagtctgaacacatcaa 175  Q
    ||||||||||  |||||| || ||  ||| || | |||||| |||||||| ||||||||||    
T  9397843 ccctaaactcatcaacttcacgcattttttttatacttctcgtcaagtctaaacacatcaa 9397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 9655492 - 9655360
Alignment:
Q  40 caatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccc 139  Q
    ||||| ||||||  |||| ||||||||||||| || ||||||||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| ||||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  140 atttcttctccttctcatcaagtctgaacacat 172  Q
    |||||||||||||||||| || |||||| ||||    
T  9655392 atttcttctccttctcatgaaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 175
Target Start/End: Complemental strand, 9695764 - 9695616
Alignment:
Q  27 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 126  Q
    |||| ||||||||||||| || ||  ||||| |||| || |||||||| ||||| ||||||||  | | |||||| |||||||| |||||||||||| |     
T  9695764 actatagatgacacaattcccatttgcaacacacaactctgaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattg 9695665  T
Q  127 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 175  Q
    | |||||||||||| |||||||||||||||||||| ||||| |||||||    
T  9695664 gtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 9646499 - 9646367
Alignment:
Q  40 caatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccc 139  Q
    ||||| ||||||  |||| ||||||||||||| || ||||||||||||||||| |  || || |||||||| |||||||||||| ||  |||||| ||||    
T  9646499 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9646400  T
Q  140 atttcttctccttctcatcaagtctgaacacat 172  Q
    |||||||||||||||||| || |||||| ||||    
T  9646399 atttcttctccttctcatgaaatctgaaaacat 9646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 9352871 - 9353003
Alignment:
Q  29 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 128  Q
    |||||||||||||||||||||||  || | ||| |||| || ||||||||||||||||||||||| ||||||  |||||||| ||| |||||||  |       
T  9352871 taaagatgacacaatttcctttgggaagacacagatcccaaccagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaatttttt 9352970  T
Q  129 caacttgacccatttcttctccttctcatcaag 161  Q
    |||||| ||||| ||||||||| ||||||||||    
T  9352971 caacttcacccacttcttctccatctcatcaag 9353003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 9432852 - 9433012
Alignment:
Q  15 gaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactcta 114  Q
    |||| |||||||| ||||||||| |||||| |||| |  |||| |||||||||| || ||||||||||| ||| || ||  ||| | ||||||||| |||    
T  9432852 gaatacatcatcaataaagatgatacaattcccttcggaaacacacaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaacccta 9432951  T
Q  115 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 175  Q
    || |||||| ||   | ||| ||||| ||| |||||||||||||||||||||| |||||||    
T  9432952 tctcctaaattcttgatcttcacccacttcctctccttctcatcaagtctgaaaacatcaa 9433012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 9416534 - 9416689
Alignment:
Q  20 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 119  Q
    |||||||| ||||||  |||||||| |||||   |||| ||| |||| | || ||||||||||| ||||||  |||| | |||||||| || ||||||||    
T  9416534 catcatcaataaagacaacacaattccctttagtaacacacatatccaaggctgaagcagaaaatgaacatttattcacgaagaacaacaccctatcccc 9416633  T
Q  120 taaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 175  Q
    |||||||| |||||| |||||||| || | |||||| ||||| | |||||||||||    
T  9416634 taaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacatcaa 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 9340679 - 9340772
Alignment:
Q  67 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 160  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340679 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 9377056 - 9377149
Alignment:
Q  29 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaa 122  Q
    |||||||||||||||||||||||  || | ||| |||| |||||||||||| ||||||||||||| ||||||  |||||||  |||||||||||    
T  9377056 taaagatgacacaatttcctttgggaagacacagatcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaa 9377149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 9614104 - 9614009
Alignment:
Q  24 atcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 119  Q
    |||| ||||||| |||||||||||||||  || | ||| ||| ||||||||||||||||| ||||||||| |||||||||| |||||  |||||||    
T  9614104 atcaataaagataacacaatttcctttggtaagacacagatctgaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 9626626 - 9626488
Alignment:
Q  29 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 128  Q
    |||||||||  ||||| ||||||  |||| ||||||||||||| || |||||||| ||   ||| || || || |||||||| |||||||||||| ||      
T  9626626 taaagatgatgcaattccctttggaaacacacaaatccgaagctgatgcagaaaatgatgttcctttgccaaaaaacaaaaccctatcccctaaattcat 9626527  T
Q  129 caacttgacccatttcttctccttctcatcaagtctgaa 167  Q
    ||| || |||||||||||||||||||||| || ||||||    
T  9626526 caaattcacccatttcttctccttctcatgaaatctgaa 9626488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 141
Target Start/End: Complemental strand, 9441915 - 9441815
Alignment:
Q  41 aatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 140  Q
    |||| |||||||||||| ||| |||| | || ||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||  |||||| |||||    
T  9441915 aattccctttgacaacacacatatccaaggctgaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcaccca 9441816  T
Q  141 t 141  Q
    |    
T  9441815 t 9441815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 9347957 - 9348088
Alignment:
Q  29 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 128  Q
    |||||| |||||||||||||||   || | | | ||| |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |      
T  9347957 taaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcct 9348056  T
Q  129 caacttgacccatttcttctccttctcatcaa 160  Q
    |||||| ||||| |||||||||||||||||||    
T  9348057 caacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 9369611 - 9369742
Alignment:
Q  29 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 128  Q
    |||||| |||||||||||||||   || | | | ||| |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |      
T  9369611 taaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcct 9369710  T
Q  129 caacttgacccatttcttctccttctcatcaa 160  Q
    |||||| ||||| |||||||||||||||||||    
T  9369711 caacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 9756381 - 9756502
Alignment:
Q  60 caaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 159  Q
    ||||||||| ||||| ||||| || ||||| || | ||| || |||||||| |||||||| ||| || |||||||||||||  | ||||| |||||||||    
T  9756381 caaatccgatgcagatgcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatca 9756480  T
Q  160 agtctgaacacatcaagcttta 181  Q
    || ||  ||||||||| |||||    
T  9756481 agcctatacacatcaatcttta 9756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  127 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 175  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 89
Target Start/End: Complemental strand, 16011797 - 16011768
Alignment:
Q  60 caaatccgaagcagaagcagaaaacgaaca 89  Q
    ||||||||||||||||||||||||||||||    
T  16011797 caaatccgaagcagaagcagaaaacgaaca 16011768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 31 - 280
Target Start/End: Complemental strand, 44688929 - 44688680
Alignment:
Q  31 aagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 130  Q
    ||||| |||||||| |||||| ||| ||||||||||||||||| || |||||| ||| || |||||||||||||||||| ||||| |||||||||||  |    
T  44688929 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 44688830  T
Q  131 acttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctac 230  Q
    |||| ||||||||||| | ||||||||  ||  ||||||||||||||  || |||||||||||| ||||| ||||||| |||||||||||| ||||| ||    
T  44688829 actttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccac 44688730  T
Q  231 tagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 280  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  44688729 tagcaacaactcaccttcactctctaccaggaattttatgtcccctccat 44688680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  115 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 214  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  215 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 280  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 13170798 - 13170758
Alignment:
Q  15 gaatgcatcatcactaaagatgacacaatttcctttgacaa 55  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13170798 gaatgcatcatcactaaagatgacacaatttcctttgacaa 13170758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 18991159 - 18991422
Alignment:
Q  14 tgaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactct 113  Q
    |||| ||||| ||| |||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  18991159 tgaacgcatcgtcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccct 18991258  T
Q  114 atcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatga 213  Q
    || |||||| |||  | || |   ||||| |||||   |||||| ||| || ||||| |  || |||| ||| | ||| |||||||| |||||||||||     
T  18991259 attccctaagctcttcgacct---ccattccttctttctctcattaagcctaaacaccttcagttttagacctttttcgccagggaacccaaaacaatgc 18991355  T
Q  214 gagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 280  Q
    |||||| | ||||| ||||||||||||||||  |||| |||||||| ||||||||| ||||||||||    
T  18991356 gagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttcatatcccctccat 18991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 4428591 - 4428742
Alignment:
Q  19 gcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccc 118  Q
    ||||||||| |||||||||||||||| |||||   ||||||||| || |||||||| ||||||||| |||||||||||||||| |||||||| |||||||    
T  4428591 gcatcatcaataaagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatccc 4428690  T
Q  119 ctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 170  Q
    | ||||||| ||| || ||||||||   | ||||||||||||| || |||||    
T  4428691 ccaaactcgtcaatttcacccatttacgcgccttctcatcaagcctaaacac 4428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 4439820 - 4439927
Alignment:
Q  19 gcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccc 118  Q
    ||||||||| |||||||||||||||| |||||   |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |    
T  4439820 gcatcatcaataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctc 4439919  T
Q  119 ctaaactc 126  Q
    | ||||||    
T  4439920 ccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 235195 - 235311
Alignment:
Q  41 aatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 140  Q
    |||| ||||||  |||| ||||||||||||||||||||||||||||||||     ||||||||| |||||||||||||||||| | |||||||| |||||    
T  235195 aattccctttgggaacacacaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcaccca 235294  T
Q  141 tttcttctccttctcat 157  Q
     ||||||||||| ||||    
T  235295 cttcttctccttttcat 235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 8814500 - 8814385
Alignment:
Q  37 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 136  Q
    |||||||| ||||||  |||| |||||||| |||||||||||||||| |||||      |||||| ||||||||||||||||||||| |||||||||| |    
T  8814500 acacaattccctttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttca 8814401  T
Q  137 cccatttcttctcctt 152  Q
    |||| |||||||||||    
T  8814400 cccacttcttctcctt 8814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 246841 - 246958
Alignment:
Q  33 gatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 132  Q
    |||||||||||| ||||||  |||| |||||||| |||||||||||||||| || ||      |||||||||||||||| |||| |||||| | ||||||    
T  246841 gatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaac 246940  T
Q  133 ttgacccatttcttctcc 150  Q
    || |||||||||||||||    
T  246941 ttcacccatttcttctcc 246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 251515 - 251412
Alignment:
Q  54 aacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttc 153  Q
    |||| |||||||||| |||||| ||||||| ||||||     |||||||||||||||||||||||||| | |||||||||| ||||| ||||| |||||     
T  251515 aacacacaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttt 251416  T
Q  154 tcat 157  Q
    ||||    
T  251415 tcat 251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 231589 - 231674
Alignment:
Q  67 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 152  Q
    ||||||||||||||||| ||||||     |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231589 gaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 20694447 - 20694304
Alignment:
Q  29 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 128  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |     
T  20694447 taaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgt 20694348  T
Q  129 caacttgacccatttcttctccttctcatcaagtctgaacacat 172  Q
    |||  | ||||||||||||||||| |||||||| ||||||||||    
T  20694347 caaactcacccatttcttctccttttcatcaagcctgaacacat 20694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 7041464 - 7041612
Alignment:
Q  27 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 126  Q
    |||||||||||||||||| |||||| ||||  ||||||||||||||||| |||| ||||||||| | |  |||||||||||||| ||||||||||||||     
T  7041464 actaaagatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaacta 7041563  T
Q  127 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 175  Q
    | |||||| ||||| |||||||||||||||| |||| | |||| |||||    
T  7041564 gtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaa 7041612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 7046801 - 7046937
Alignment:
Q  21 atcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccct 120  Q
    |||| |||||| ||| |||||||| |||||| ||||| ||||||| |||  |||||||||||||||||||    ||||||||||||||||| ||||||||    
T  7046801 atcagcactaatgatcacacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccct 7046900  T
Q  121 aaactcgccaacttgacccatttcttctccttctcat 157  Q
    |||||||  ||||| ||||| ||||||||||||||||    
T  7046901 aaactcgttaacttcacccacttcttctccttctcat 7046937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 7025720 - 7025854
Alignment:
Q  29 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaa 122  Q
    ||||||||||| |||| |||||| ||||| ||||||| |||||| |||||||||||||||||      ||   ||||||||||||||| ||||| |||||    
T  7025720 taaagatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaa 7025819  T
Q  123 actcgccaacttgacccatttcttctccttctcat 157  Q
    ||||| |||||| ||||| ||||||||||||||||    
T  7025820 actcgtcaacttcacccacttcttctccttctcat 7025854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 7012784 - 7012918
Alignment:
Q  29 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaa 122  Q
    ||||||||||| |||| |||||| ||||| |||||||||||||| | |||||||||||||||      ||   ||||||||||||||  ||||| |||||    
T  7012784 taaagatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaa 7012883  T
Q  123 actcgccaacttgacccatttcttctccttctcat 157  Q
    ||| | |||||| ||||| ||||||||||||||||    
T  7012884 acttgtcaacttcacccacttcttctccttctcat 7012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  96 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 157  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 9159646 - 9159515
Alignment:
Q  30 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaaa 123  Q
    |||||||| |||||| ||||||  |||| ||||||| ||||||||| ||||||||||| ||      ||   ||||||||||||||| ||||||||||||    
T  9159646 aaagatgatacaattccctttggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaa 9159547  T
Q  124 ctcgccaacttgacccatttcttctccttctc 155  Q
    ||||  || || ||||| ||||||||||||||    
T  9159546 ctcgttaatttcacccacttcttctccttctc 9159515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 9170782 - 9170915
Alignment:
Q  30 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaaa 123  Q
    |||||||| |||||| |||| |  |||| ||||||| ||||||||| ||||||||||| ||      ||   ||||||||||||||| ||||||||||||    
T  9170782 aaagatgatacaattcccttgggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaa 9170881  T
Q  124 ctcgccaacttgacccatttcttctccttctcat 157  Q
    ||||  || || ||||| ||||||||||||||||    
T  9170882 ctcgttaatttcacccacttcttctccttctcat 9170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 3695661 - 3695792
Alignment:
Q  30 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 129  Q
    |||||| |||||||| |||||| || |||||||||||||||||  ||||||||| ||||||    | || |||||||||||||||||||||||||||  |    
T  3695661 aaagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctac 3695760  T
Q  130 aacttgacccatttcttctccttctcatcaagt 162  Q
    |||||||  || ||||||| |||||||| ||||    
T  3695761 aacttga-tcacttcttcttcttctcattaagt 3695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 450219 - 450111
Alignment:
Q  67 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 166  Q
    ||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || |    
T  450219 gaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaa 450120  T
Q  167 acacatcaa 175  Q
    |||||||||    
T  450119 acacatcaa 450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 18571086 - 18571213
Alignment:
Q  37 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaa---aactctatcccctaaactcgccaact 133  Q
    |||||||| ||||||  |||| |||||||||||||||||  |||||| |||| | |  | || ||||||||   |||| ||||||||||||||| ||| |    
T  18571086 acacaattccctttggaaacacacaaatccgaagcagaaatagaaaaagaacctgccatgcctaagaacaaaacaactgtatcccctaaactcgtcaatt 18571185  T
Q  134 tgacccatttcttctccttctcatcaag 161  Q
    | ||||| ||||||||||||||||||||    
T  18571186 tcacccacttcttctccttctcatcaag 18571213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 33541623 - 33541750
Alignment:
Q  30 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 129  Q
    ||||| ||||||||| |||||| |||| |||||||| |||||||| |||||||| |||||  ||  ||| |||||||||||  |||| |||||||||       
T  33541623 aaagaggacacaattacctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 33541722  T
Q  130 aacttgacccatttcttctccttctcat 157  Q
    ||||| ||||| | | ||||||||||||    
T  33541723 aacttcacccactccgtctccttctcat 33541750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University