View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_186 (Length: 283)
Name: NF6867A_low_186
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_186 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 39 - 278
Target Start/End: Complemental strand, 14560142 - 14559903
Alignment:
| Q |
39 |
ctctaaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaa |
138 |
Q |
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| T |
14560142 |
ctctaaaaccaaaagtgaatcccacctcaacacttaagaaatttcaatcaattaaactcctttcatgataataacgtgtttcatatgcttgttgtgacaa |
14560043 |
T |
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| Q |
139 |
gcttttccctccttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataactgaatcttcttgaactgattaaatgtgtgtt |
238 |
Q |
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| T |
14560042 |
gcttttccctccttcaccaccacagttttgtgtcagtggaggtccacacaactcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
14559943 |
T |
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| Q |
239 |
ccagtttgtatttttcccaccaagtgattacaagagaggt |
278 |
Q |
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| T |
14559942 |
ccagtttgtatttttcccaccaagtgattacaagagaggt |
14559903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 51 - 278
Target Start/End: Complemental strand, 14569885 - 14569658
Alignment:
| Q |
51 |
aagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaagcttttccctcc |
150 |
Q |
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| T |
14569885 |
aagtgaattccaactcaacacttaagaaattctaatcaattgaacccctgtcgtgaaaataaggtgtttcatatgcttgttgttacaagcttttccctcc |
14569786 |
T |
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| Q |
151 |
ttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataactgaatcttcttgaactgattaaatgtgtgttccagtttgtatt |
250 |
Q |
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| T |
14569785 |
ttcaccaacacaattttgtgtcagtggaggtccacacaactctttattacctataagtgaatcttcttgaaatgattgaatttgtgttccaggtggtatt |
14569686 |
T |
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| Q |
251 |
tttcccaccaagtgattacaagagaggt |
278 |
Q |
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| T |
14569685 |
tttcccaccaaatgagtacaagagaggt |
14569658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 32549371 - 32549283
Alignment:
| Q |
176 |
ggaggtccacacagctcttcattgcctataactgaatcttcttgaactgattaaatgtgtgttccagtttgtatttttcccaccaagtg |
264 |
Q |
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| T |
32549371 |
ggaggtccaaatagcccttcattgccaataaatgaatctgcttgaaatgattgaatctgtgtcccagttggtattcttcccaccaagtg |
32549283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 32549498 - 32549451
Alignment:
| Q |
43 |
aaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaat |
90 |
Q |
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| T |
32549498 |
aaaaccaaaagtgaatcccaactcagcactcaagaaattccaatcaat |
32549451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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