View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_187 (Length: 282)
Name: NF6867A_low_187
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_187 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 54124133 - 54124395
Alignment:
| Q |
7 |
gttagcttatggttattatcacgccacaacaaaaagattgaaggaggatgacaagcttgcatgcgtgtgggctatatatatagagccaacttcattaatt |
106 |
Q |
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| T |
54124133 |
gttagcttatggttatgatcacgccacaacaaaaagattgaaggaggatgacaagcttgcatgcgtgtgggctatatatatagagccaacttcattaatt |
54124232 |
T |
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| Q |
107 |
agccatgcatgggaagtttaaacatgatatgatacattaagtggcacgcaatacaaaagacatttaagtgataagtgatgacatgaacattaagagggaa |
206 |
Q |
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| T |
54124233 |
agccatgcatgggaagtttaaacatgatatgatacattaagtggtacgcaatacaaaagacatttaaatgataagtgataacataaacattagaagggaa |
54124332 |
T |
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| Q |
207 |
actcaaaatttaaaaacaacattaacgagacacaatggcttgcttaacacgcctaagttatat |
269 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54124333 |
actcaaaatttgaaaacaacattaaccagacacaatggcttgcttaacacgcctaagttatat |
54124395 |
T |
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