View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_192 (Length: 280)
Name: NF6867A_low_192
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_192 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 29204166 - 29204427
Alignment:
| Q |
7 |
ttttctagggacagaacctctattgaagattttgaaataataaaaccaataagcagaggtgcgtttggacgagtttttcttgcccagaaaagatcgactg |
106 |
Q |
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| T |
29204166 |
ttttctaaggacagaacctctattgaagattttgaaataataaaaccaataagcagaggtgcgtttggacgagtttttcttgcccagaaaagatcgactg |
29204265 |
T |
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| Q |
107 |
gtgatttatttgctattaaggtaagcttccttaaaccgaaatgaatcaaataattactttgcagaaacaaagctagagagattgatttagcgaactatgt |
206 |
Q |
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| T |
29204266 |
gtgatttatttgctattaaggtaagcttccttaaaccgaaatgaatcaaataattactttgcagaaacaaagctagagagattgatttagcgaactatgt |
29204365 |
T |
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| Q |
207 |
tattaaacagtgcgtacaaaaagcatgtatctattcctgaagttgtaaaataaaactagtat |
268 |
Q |
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| T |
29204366 |
tattaaacagtgcgtacaaaaagcatgtatctattcctgaagttgtaaaataaaactagtat |
29204427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 12647710 - 12647449
Alignment:
| Q |
7 |
ttttctagggacagaacctctattgaagattttgaaataataaaaccaataagcagaggtgcgtttggacgagtttttcttgcccagaaaagatcgactg |
106 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647710 |
ttttctaaggacagaacctctattgaagattttgaaataataaaaccaataagcagaggtgcgtttggacgagtttttcttgcccagaaaagatcgactg |
12647611 |
T |
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| Q |
107 |
gtgatttatttgctattaaggtaagcttccttaaaccgaaatgaatcaaataattactttgcagaaacaaagctagagagattgatttagcgaactatgt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12647610 |
gtgatttatttgctattaaggtaagcttccttaaaccgaaatgaatcaaataattactttgcagaaacaaagctagagagattgatttagcaaactatgt |
12647511 |
T |
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| Q |
207 |
tattaaacagtgcgtacaaaaagcatgtatctattcctgaagttgtaaaataaaactagtat |
268 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12647510 |
tattaaacagtgcatacaaaaagcatgtatccattcctgaagttgtaaaataaaactagtat |
12647449 |
T |
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