View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_193 (Length: 279)

Name: NF6867A_low_193
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_193
NF6867A_low_193
[»] chr6 (27 HSPs)
chr6 (10-273)||(5688749-5689018)
chr6 (10-273)||(5177919-5178177)
chr6 (10-273)||(5279744-5280008)
chr6 (23-133)||(5242504-5242614)
chr6 (22-157)||(5126597-5126732)
chr6 (10-235)||(5065338-5065564)
chr6 (24-133)||(5427094-5427203)
chr6 (10-125)||(5398226-5398341)
chr6 (10-128)||(5346209-5346327)
chr6 (27-131)||(5100812-5100916)
chr6 (27-131)||(5135913-5136017)
chr6 (10-126)||(5180773-5180889)
chr6 (21-142)||(5098402-5098523)
chr6 (10-131)||(5156007-5156128)
chr6 (10-131)||(5372277-5372398)
chr6 (28-129)||(23127306-23127407)
chr6 (10-131)||(5351580-5351701)
chr6 (10-133)||(5352855-5352978)
chr6 (10-131)||(2939095-2939216)
chr6 (21-126)||(5283223-5283328)
chr6 (22-133)||(5072674-5072785)
chr6 (32-126)||(5439213-5439307)
chr6 (15-124)||(5253718-5253827)
chr6 (10-100)||(5334365-5334455)
chr6 (15-129)||(5124439-5124553)
chr6 (21-126)||(5256113-5256218)
chr6 (15-126)||(5448794-5448905)
[»] chr4 (7 HSPs)
chr4 (22-154)||(4122615-4122747)
chr4 (26-204)||(25569036-25569217)
chr4 (8-166)||(4132577-4132732)
chr4 (8-131)||(4319296-4319419)
chr4 (87-133)||(7884147-7884193)
chr4 (88-133)||(4346621-4346666)
chr4 (88-133)||(4362810-4362855)
[»] chr3 (4 HSPs)
chr3 (22-125)||(47985393-47985496)
chr3 (22-125)||(48003967-48004070)
chr3 (22-125)||(47994680-47994783)
chr3 (22-125)||(48013252-48013355)
[»] chr7 (1 HSPs)
chr7 (10-133)||(36212913-36213036)
[»] scaffold0294 (1 HSPs)
scaffold0294 (28-124)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 5689018 - 5688749
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5689018 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagt 5688919  T
Q  110 ttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtg---tagtggtgatgaagatgaatgc 206  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  5688918 ttatctcgtatatgatgaaccaattcgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtagtggtgatgaagatgaatgc 5688819  T
Q  207 tattaagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga 273  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  5688818 tattaagagaggtctcttctaatgcacaagattacaatgtcattgttggtagtagtggtgatgaaaatga 5688749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 5177919 - 5178177
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 109  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||    
T  5177919 atgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagt 5178018  T
Q  110 ttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctat 209  Q
    ||||||||||||||||||||||||  | ||||| ||||||||||| |||||||||||||||      ||||||||||||||||||||||||||||||| |    
T  5178019 ttatctcgtatatgatgaaccaattggagaaaaaatggagcaatgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgcttt 5178112  T
Q  210 -taagagaggtctcttctaatgcacaagattaccatgtcattgttagtagtggtgatgaaaatga 273  Q
     | ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5178113 gtcagagaagtctcttctaatgcacaagattacaatgtcattgttagtagtggtgatgaaaatga 5178177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 5279744 - 5280008
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 109  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||    
T  5279744 atgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagt 5279843  T
Q  110 ttatctcgtatatgatgaaccaatccgtgaaaatatggagcaa---tgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgc 206  Q
    ||||||||||||||||||||||||  | ||||| |||||||||   || |||||||||||||||      ||||||||||||||||||||||||||||||    
T  5279844 ttatctcgtatatgatgaaccaattggagaaaaaatggagcaatattgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgc 5279937  T
Q  207 tat-taagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga 273  Q
    | | | ||||| |||||||||||||||||||| ||| ||||||||||   |||||||||||||||||||||    
T  5279938 tttgtcagagaagtctcttctaatgcacaagaatacaatgtcattgttagtagtagtggtgatgaaaatga 5280008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 5242614 - 5242504
Alignment:
Q  23 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 122  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||| ||| |||||||||||||||| |||  ||||||||||||||||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  123 gatgaaccaat 133  Q
    |||||||||||    
T  5242514 gatgaaccaat 5242504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 5126732 - 5126597
Alignment:
Q  22 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 121  Q
    ||||||||||||||||||||||| || |||||||||| ||| |||||  ||||||| | |||||||||||||||||||| ||| | ||||||||| ||||    
T  5126732 agagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatata 5126633  T
Q  122 tgatgaaccaatccgtgaaaatatggagcaatgtca 157  Q
    ||||||||||||  |||||| |||| ||||||||||    
T  5126632 tgatgaaccaattggtgaaactatgaagcaatgtca 5126597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 5065564 - 5065338
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 109  Q
    |||| ||||| |||||||||||||||||||| |||||| | || ||||||||  |||||  ||||||||| ||||||||| |||||||||  ||||||||    
T  5065564 atgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagt 5065465  T
Q  110 ttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctat 209  Q
    ||||||| ||||||||||||||||   ||||||   |||| | ||||| | ||||||  | |||| ||||||  |||| ||||||||| ||||||||| |    
T  5065464 ttatctcatatatgatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgcttt 5065365  T
Q  210 -taagagaggtctcttctaatgcacaa 235  Q
     || | ||| |||||||| ||||||||    
T  5065364 ctaggcgagatctcttctcatgcacaa 5065338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 5427094 - 5427203
Alignment:
Q  24 agagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatg 123  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||| ||| ||||| |||||| ||| |||  |||||||||||||||||    
T  5427094 agagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatg 5427193  T
Q  124 atgaaccaat 133  Q
    ||||||||||    
T  5427194 atgaaccaat 5427203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 5398226 - 5398341
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 109  Q
    |||||||||| || || ||||||||||||||||||||| |||||||||| |||||||| | |||||| || || | ||||||||||||||| ||||||||    
T  5398226 atgaagaggggcaaagggtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagt 5398325  T
Q  110 ttatctcgtatatgat 125  Q
    |||||| |||||||||    
T  5398326 ttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 5346209 - 5346327
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 109  Q
    |||| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||   |||| |||| || ||||||||||||||||| ||| || |    
T  5346209 atgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaat 5346308  T
Q  110 ttatctcgtatatgatgaa 128  Q
    ||||||| |||||||||||    
T  5346309 ttatctcatatatgatgaa 5346327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 5100916 - 5100812
Alignment:
Q  27 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 126  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||    
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5100817  T
Q  127 aacca 131  Q
    |||||    
T  5100816 aacca 5100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 5136017 - 5135913
Alignment:
Q  27 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 126  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||    
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5135918  T
Q  127 aacca 131  Q
    |||||    
T  5135917 aacca 5135913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 5180889 - 5180773
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 109  Q
    |||||||||| ||||| ||||||||||| ||||||||  |||||||||||||||| |||| ||||||||| ||  |||||||||||||||| ||| || |    
T  5180889 atgaagagggtcagagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaat 5180790  T
Q  110 ttatctcgtatatgatg 126  Q
    |||||| ||||||||||    
T  5180789 ttatctggtatatgatg 5180773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 5098402 - 5098523
Alignment:
Q  21 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 120  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||  ||  |||||| || ||| ||||||||||||| || ||| |||||||||| ||||    
T  5098402 cagagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtat 5098501  T
Q  121 atgatgaaccaatccgtgaaaa 142  Q
    ||||||||| |||  |||||||    
T  5098502 atgatgaacaaattggtgaaaa 5098523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 5156128 - 5156007
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 109  Q
    |||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||   || |||||| || |    ||||||||||||||| ||||||||    
T  5156128 atgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagt 5156029  T
Q  110 ttatctcgtatatgatgaacca 131  Q
    |||||| ||||| |||||||||    
T  5156028 ttatcttgtatacgatgaacca 5156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 5372277 - 5372398
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 109  Q
    |||||||||| ||||| |||||||||||| |||||||| |||||||||||||| |   || |||| | || || | ||||||||||||||| |||||| |    
T  5372277 atgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaat 5372376  T
Q  110 ttatctcgtatatgatgaacca 131  Q
    |||||||||||| |||||||||    
T  5372377 ttatctcgtatacgatgaacca 5372398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 23127407 - 23127306
Alignment:
Q  28 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga 127  Q
    |||||||||||  ||||||| |||||||| |||||||||||   |||||||| || |||||| |||||||||| |||||||||||||| |||||||||||    
T  23127407 tagtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatga 23127308  T
Q  128 ac 129  Q
    ||    
T  23127307 ac 23127306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 5351580 - 5351701
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 109  Q
    |||| ||||| |||||  |||||||||||||||||||  ||||||||||||||||  ||| |||||| || || | || ||||||||| || |||  |||    
T  5351580 atgaggaggggcagaggttagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagt 5351679  T
Q  110 ttatctcgtatatgatgaacca 131  Q
    ||||||||||||||||||||||    
T  5351680 ttatctcgtatatgatgaacca 5351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 5352978 - 5352855
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 109  Q
    |||| ||||| |||||||||||||||||||| || ||| || ||||||| ||||| |||  |||||| || ||  ||||||| |||||||| |||||| |    
T  5352978 atgaggaggggcagagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaat 5352879  T
Q  110 ttatctcgtatatgatgaaccaat 133  Q
    |||||| ||||||||| |||||||    
T  5352878 ttatctggtatatgataaaccaat 5352855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 2939095 - 2939216
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 109  Q
    ||||||| || ||||| |||||||||||| || ||||| ||||||||||||||||   || |||| | || || | || ||||||||||||  ||||| |    
T  2939095 atgaagaagggcagagggtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaat 2939194  T
Q  110 ttatctcgtatatgatgaacca 131  Q
    ||||||||||||||||||||||    
T  2939195 ttatctcgtatatgatgaacca 2939216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 5283328 - 5283223
Alignment:
Q  21 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 120  Q
    ||||| ||| |||||||||| |||||  ||||||||||||||||  | | ||||||||| ||| |||||||||||||||| ||| || ||||||| ||||    
T  5283328 cagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtat 5283229  T
Q  121 atgatg 126  Q
    ||||||    
T  5283228 atgatg 5283223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 5072785 - 5072674
Alignment:
Q  22 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 121  Q
    ||||| |||||||||||||||| ||| ||||| |||||||||||||   |||| |||| |||| |||||||||||| || |||| | |||||||| ||||    
T  5072785 agagattagtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatctcatata 5072686  T
Q  122 tgatgaaccaat 133  Q
     |||||| ||||    
T  5072685 cgatgaatcaat 5072674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 5439213 - 5439307
Alignment:
Q  32 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 126  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||  | || | ||||||||  || || ||| ||| |||||||||||||||||    
T  5439213 atcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagcttatctcgtatatgatg 5439307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 5253718 - 5253827
Alignment:
Q  15 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 114  Q
    ||||| || |||||| ||| |||||| |||||| | || ||||||||| |||||  ||||||||| ||| |||||||||||||||  || ||||||||||    
T  5253718 gaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatc 5253817  T
Q  115 tcgtatatga 124  Q
    || |||||||    
T  5253818 tcatatatga 5253827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 5334365 - 5334455
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaa 100  Q
    ||||||||||  |||| ||||||||| || |||||||| |||||||||||||||| |||| |||||| || || | ||||||| |||||||    
T  5334365 atgaagaggggtagagggtagtatcatgtctagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaa 5334455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 5124553 - 5124439
Alignment:
Q  15 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 114  Q
    ||||| || ||| ||||||| |||||||||||| |||| ||||||||  |||||| ||||||| | ||| | |||||||||||| | |||||| | |||     
T  5124553 gaggggcatagattagtatcgagtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtata 5124454  T
Q  115 tcgtatatgatgaac 129  Q
    |  ||||||||||||    
T  5124453 ttatatatgatgaac 5124439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 5256218 - 5256113
Alignment:
Q  21 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 120  Q
    ||||| ||| |||||||||| |||||  |||||||||||||||| || | ||||||  | || | ||||||||||||||| ||| || ||||| | ||||    
T  5256218 cagagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtat 5256119  T
Q  121 atgatg 126  Q
    ||||||    
T  5256118 atgatg 5256113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 5448794 - 5448905
Alignment:
Q  15 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 114  Q
    ||||| |||||  |||||||||||||||||||  | |||||||||||| | |||| |||||| || || | ||||| |||| |||| |||  ||| ||||    
T  5448794 gaggggcagaggttagtatcaagtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtatatc 5448893  T
Q  115 tcgtatatgatg 126  Q
    | ||||||||||    
T  5448894 tggtatatgatg 5448905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 4122747 - 4122615
Alignment:
Q  22 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 121  Q
    ||||||| ||||||| ||| |||||| || ||||||||||| |||||  ||||||||  ||| |||||||||||| ||| ||| ||||||||||| ||||    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  122 tgatgaaccaatccgtgaaaatatggagcaatg 154  Q
    ||||||||||||| ||||||| || ||||||||    
T  4122647 tgatgaaccaatcggtgaaaaaatagagcaatg 4122615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 204
Target Start/End: Original strand, 25569036 - 25569217
Alignment:
Q  26 agtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttga---caacggtttcattgtgaagaaaacaacagtttatctcgtatat 122  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||||      | ||||||  |||||||| ||||||||||||||||||||     
T  25569036 agtagtatcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgagtggcgcagtttcaaagtgaagaatacaacagtttatctcgtatac 25569135  T
Q  123 gatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaat 204  Q
    ||||||| |||  | ||||  ||||||||| |||||  |  ||||||||||| |||||| | || |||||||||| ||||||    
T  25569136 gatgaactaattggcgaaataatggagcaaagtcaaacatcagaagaaaatgctattgtttttattggtgatgaaaatgaat 25569217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 4132732 - 4132577
Alignment:
Q  8 aaatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 107  Q
    |||||| ||| | |||||||||||||||| ||| |||||| || ||||||| ||| |||||   |||||||  ||| |||||||||||| ||| ||| ||    
T  4132732 aaatgaggagtggcagagagtagtatcaaatatggaacctggtgacaaagtcgagattgtt---gtttttgggaacagtttcattgtgatgaagacagca 4132636  T
Q  108 gtttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaaga 166  Q
    ||||||||| ||||||||||||||||  |||||||| ||| ||||||||| | ||||||    
T  4132635 gtttatctcatatatgatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga 4132577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 4319419 - 4319296
Alignment:
Q  8 aaatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 107  Q
    |||||| ||| | |||||||| ||| ||| ||| |||||| || |||| |||||| |||||   |||||||  ||| |||||||||||| ||| ||| ||    
T  4319419 aaatgaggagtggcagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagca 4319320  T
Q  108 gtttatctcgtatatgatgaacca 131  Q
    ||||||||| ||||||||||||||    
T  4319319 gtttatctcatatatgatgaacca 4319296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 7884193 - 7884147
Alignment:
Q  87 ttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 133  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||    
T  7884193 ttcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaat 7884147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 4346621 - 4346666
Alignment:
Q  88 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 133  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4346621 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4346666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 4362810 - 4362855
Alignment:
Q  88 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 133  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4362810 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4362855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 47985496 - 47985393
Alignment:
Q  22 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 121  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  47985496 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47985397  T
Q  122 tgat 125  Q
    ||||    
T  47985396 tgat 47985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 48004070 - 48003967
Alignment:
Q  22 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 121  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  48004070 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48003971  T
Q  122 tgat 125  Q
    ||||    
T  48003970 tgat 48003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 47994783 - 47994680
Alignment:
Q  22 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 121  Q
    ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  47994783 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47994684  T
Q  122 tgat 125  Q
    ||||    
T  47994683 tgat 47994680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 48013355 - 48013252
Alignment:
Q  22 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 121  Q
    ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||    
T  48013355 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48013256  T
Q  122 tgat 125  Q
    ||||    
T  48013255 tgat 48013252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 36213036 - 36212913
Alignment:
Q  10 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 109  Q
    |||| ||||| |||||| |||||||||||||||||||| || | ||| |||||||||||  ||||||||| |||  ||||||||||||||| ||| |  |    
T  36213036 atgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgat 36212937  T
Q  110 ttatctcgtatatgatgaaccaat 133  Q
    ||||||| | ||||||||||||||    
T  36212936 ttatctcatttatgatgaaccaat 36212913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 7974 - 7878
Alignment:
Q  28 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatga 124  Q
    ||||||||||| |||||||  | ||||||||||||||||||  ||||||||   |||||||||||| |||  |||||||| |||||||  |||||||    
T  7974 tagtatcaagtgtagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga 7878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University