View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_197 (Length: 277)

Name: NF6867A_low_197
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_197
NF6867A_low_197
[»] chr8 (9 HSPs)
chr8 (3-254)||(32166640-32166890)
chr8 (3-191)||(33897618-33897807)
chr8 (3-183)||(35574645-35574827)
chr8 (96-184)||(29969153-29969241)
chr8 (1-53)||(12736074-12736126)
chr8 (98-148)||(6803876-6803926)
chr8 (1-62)||(6630542-6630603)
chr8 (98-189)||(6630316-6630406)
chr8 (1-41)||(29969129-29969169)
[»] chr7 (18 HSPs)
chr7 (1-191)||(34891414-34891605)
chr7 (1-191)||(3191570-3191760)
chr7 (1-183)||(42012690-42012872)
chr7 (21-183)||(31171316-31171480)
chr7 (3-73)||(32138891-32138961)
chr7 (5-183)||(31152738-31152919)
chr7 (5-62)||(32962398-32962455)
chr7 (1-53)||(23944096-23944148)
chr7 (1-58)||(34891380-34891437)
chr7 (26-145)||(22593597-22593722)
chr7 (18-176)||(8900670-8900831)
chr7 (98-189)||(33362347-33362436)
chr7 (19-57)||(7463864-7463902)
chr7 (1-51)||(33362415-33362465)
chr7 (1-50)||(8354395-8354444)
chr7 (37-73)||(27651379-27651415)
chr7 (1-53)||(27651513-27651564)
chr7 (21-73)||(29152350-29152402)
[»] chr5 (17 HSPs)
chr5 (1-184)||(7113617-7113804)
chr5 (1-182)||(40483739-40483922)
chr5 (1-70)||(2243319-2243388)
chr5 (1-73)||(973111-973183)
chr5 (96-184)||(2243249-2243335)
chr5 (3-70)||(14138548-14138615)
chr5 (96-197)||(17739908-17740009)
chr5 (19-57)||(972845-972883)
chr5 (24-73)||(7215322-7215371)
chr5 (97-197)||(7215230-7215329)
chr5 (1-73)||(17736757-17736829)
chr5 (18-62)||(37077663-37077707)
chr5 (87-202)||(39730369-39730484)
chr5 (5-57)||(39808239-39808291)
chr5 (4-53)||(39730312-39730361)
chr5 (1-53)||(22780347-22780399)
chr5 (1-73)||(37077760-37077832)
[»] chr2 (16 HSPs)
chr2 (5-191)||(13712757-13712945)
chr2 (5-183)||(9050132-9050313)
chr2 (1-73)||(16576248-16576320)
chr2 (1-70)||(16863459-16863528)
chr2 (21-183)||(38576791-38576955)
chr2 (94-151)||(38576707-38576764)
chr2 (3-51)||(2909844-2909892)
chr2 (4-197)||(16576290-16576486)
chr2 (113-183)||(9931337-9931406)
chr2 (1-62)||(38576940-38577001)
chr2 (99-183)||(25606423-25606506)
chr2 (19-62)||(34176654-34176697)
chr2 (3-69)||(35370402-35370468)
chr2 (98-191)||(28282699-28282791)
chr2 (5-73)||(25606366-25606434)
chr2 (21-73)||(28282824-28282876)
[»] chr4 (12 HSPs)
chr4 (15-191)||(25234217-25234393)
chr4 (19-197)||(25062361-25062544)
chr4 (1-118)||(15131578-15131698)
chr4 (1-147)||(54000050-54000199)
chr4 (4-67)||(4115389-4115452)
chr4 (3-62)||(20512832-20512891)
chr4 (1-74)||(22050851-22050924)
chr4 (98-191)||(55897600-55897693)
chr4 (1-57)||(54000219-54000275)
chr4 (1-52)||(25062340-25062391)
chr4 (1-62)||(11020084-11020144)
chr4 (96-189)||(22050903-22050995)
[»] chr3 (11 HSPs)
chr3 (4-159)||(39341110-39341268)
chr3 (1-156)||(42091794-42091951)
chr3 (1-72)||(46303371-46303442)
chr3 (96-197)||(54437848-54437949)
chr3 (17-74)||(31758242-31758298)
chr3 (98-155)||(39341283-39341340)
chr3 (1-73)||(34761956-34762028)
chr3 (19-73)||(54437806-54437860)
chr3 (5-62)||(48646423-48646479)
chr3 (1-53)||(20519299-20519351)
chr3 (3-59)||(54437651-54437707)
[»] chr6 (10 HSPs)
chr6 (3-155)||(20068000-20068155)
chr6 (4-73)||(32342600-32342669)
chr6 (5-104)||(23577118-23577219)
chr6 (5-53)||(32047194-32047242)
chr6 (24-70)||(20206481-20206527)
chr6 (24-70)||(22100504-22100550)
chr6 (96-151)||(32047262-32047317)
chr6 (126-180)||(23577068-23577121)
chr6 (99-145)||(26236751-26236797)
chr6 (11-72)||(23577009-23577070)
[»] chr1 (21 HSPs)
chr1 (3-73)||(46080971-46081041)
chr1 (5-73)||(10775163-10775231)
chr1 (1-73)||(34601444-34601516)
chr1 (3-120)||(7997194-7997314)
chr1 (21-110)||(44342055-44342145)
chr1 (96-189)||(3232179-3232271)
chr1 (104-189)||(7104316-7104400)
chr1 (1-73)||(24873765-24873838)
chr1 (1-73)||(24874598-24874671)
chr1 (20-73)||(42819621-42819674)
chr1 (1-62)||(52432672-52432733)
chr1 (1-73)||(12144970-12145039)
chr1 (111-200)||(49897909-49897998)
chr1 (111-184)||(67982-68054)
chr1 (1-73)||(68097-68169)
chr1 (138-197)||(68139-68198)
chr1 (1-73)||(49897870-49897942)
chr1 (1-52)||(3231979-3232030)
chr1 (1-52)||(38839664-38839715)
chr1 (1-62)||(10775028-10775089)
chr1 (1-49)||(3367806-3367854)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-57)||(36976-37033)
[»] scaffold1743 (1 HSPs)
scaffold1743 (3-62)||(794-853)
[»] scaffold0047 (1 HSPs)
scaffold0047 (15-62)||(62744-62791)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 32166640 - 32166890
Alignment:
Q  3 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaactatcgatgagcatacatttttccttgat 102  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32166640 acatgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataattgatagtaagaaaaactatcgatgagcatacatttttctttgat 32166739  T
Q  103 gaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataagaagttcgaag 202  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  32166740 gaattgggtgtaatttacctctaatgacaagtacgattcgattttggaacg-aaagagatgtaaatcacatgttaaatgaagaagataagaaattcgaag 32166838  T
Q  203 aaacactttgattggaagcagctatgtaagaaaaaaccacattcatatattg 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32166839 aaacactttgattggaagcagctatgtaagaaaaaaccacattcatatattg 32166890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 33897807 - 33897618
Alignment:
Q  3 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaa-gaaaaac-tatcgatgagcatacatttttccttg 100  Q
    ||||||||||| ||||| || ||||| ||||||||| || ||||||||||  ||||||||||||| ||||||  |||||| |||| ||||||||||||||    
T  33897807 acatgttgaatgaaggaaattaagaattttgatgtttttgagatgaaaatagtaattgatagtaaagaaaaatatatcgacgagcctacatttttccttg 33897708  T
Q  101 atgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 191  Q
    || ||||| | ||||||||| ||| |||| ||  |||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  33897707 attaattgagagtaatttacatctgatgataaacacgattagattttagaacgaaaa-agatgtaaatcacatgttaaatgaaggagataa 33897618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 35574645 - 35574827
Alignment:
Q  3 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac--tatcgatgagca-tacatttttcctt 99  Q
    ||||||||||| || |||||||| || |||||||||||||||||||||||  ||| | || |||||||||||  |||| |||||   | |||| ||| ||    
T  35574645 acatgttgaatgaatgagatgaaaaaatttgatgttcttaagatgaaaatcgtaactaattgtaagaaaaaccctatcaatgaggtctccattattcatt 35574744  T
Q  100 gatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 183  Q
    ||||||||| |||||||||||| |||||||||| || ||||||||||||||||| ||||||||  |||||| ||||| ||||||    
T  35574745 gatgaattgagggtaatttaccgctaatgacaactatgattcgattttggaacg-aaagagattaaaatcatatgttcaatgaa 35574827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 29969241 - 29969153
Alignment:
Q  96 ccttgatgaattgggggtaatttacctct-aatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaag 184  Q
    ||||||||||||| || ||||||||| || |||||||||||  |||||||| ||||||| ||||||||| | |||||||||| |||||||    
T  29969241 ccttgatgaattgtggataatttaccccttaatgacaagtagaattcgattatggaacg-aaagagatgaatatcacatgttgaatgaag 29969153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12736126 - 12736074
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 53  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||| |||||    
T  12736126 tcacatgttgaacgaaggagatgaagaagtttgatgttattaagatggaaatg 12736074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 6803876 - 6803926
Alignment:
Q  98 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttg 148  Q
    ||||||||||||| |||||||||| ||||||||||||| |||| |||||||    
T  6803876 ttgatgaattgggagtaatttacccctaatgacaagtaggatttgattttg 6803926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6630542 - 6630603
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 62  Q
    |||| |||| ||| |||||||||||||| ||| ||| |||||||||||||||| ||||||||    
T  6630542 tcacttgttaaatgaaggagatgaagaaatttaatgatcttaagatgaaaatggtaattgat 6630603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 6630316 - 6630406
Alignment:
Q  98 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 189  Q
    ||||||||||| | |||||||||| ||||||||||||| |||| ||||||| || | || |||||| | | |||||||| |||||| |||||    
T  6630316 ttgatgaattgagagtaatttacccctaatgacaagtaggatttgattttgaaatg-aaggagatggataacacatgttgaatgaaaaagat 6630406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29969169 - 29969129
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttctt 41  Q
    ||||||||||||| |||| || |||||||||||||||||||    
T  29969169 tcacatgttgaatgaaggggaagaagaagtttgatgttctt 29969129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 34891605 - 34891414
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcatacatttttcc 97  Q
    ||||||||||||| |||||||||||||| |||||||||||| |||| |||||||||| | |||||||||||||    ||||| ||||| || ||| ||||    
T  34891605 tcacatgttgaatgaaggagatgaagaaatttgatgttcttgagatcaaaatgataactaatagtaagaaaaaaccatatcggtgagcctatattcttcc 34891506  T
Q  98 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 191  Q
    |||||||| | ||||||||||||| || ||||||| ||| ||||||||| |||| | |||||||| || |||||||||||||||||||||||||    
T  34891505 ttgatgaact-ggggtaatttacccctcatgacaaatacaattcgatttgggaatg-aaagagatctagatcacatgttaaatgaagaagataa 34891414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 3191570 - 3191760
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaaga-aaaactatcgatgagcatacatttttcctt 99  Q
    |||||||||||||||||||||||||||| ||||||||| || |||||||||  |||| ||||||||| | ||||  ||   ||||  ||||||||||||     
T  3191570 tcacatgttgaataaaggagatgaagaactttgatgtttttgagatgaaaagaataactgatagtaaaagaaaatcatatgtgagtctacatttttcctc 3191669  T
Q  100 gatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 191  Q
     ||| ||||| |||||||||||  | ||| ||| |||||||| |||||| || | |||| |||||||||||||| |||||||||| ||||||    
T  3191670 catgtattggcggtaatttacccttcatgtcaaatacgattcaattttgaaatg-aaagggatgtaaatcacatcttaaatgaaggagataa 3191760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 42012872 - 42012690
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac---tatcgatgagcatacatttttcc 97  Q
    ||||||||||||||||  ||||||| |||||||||||||||  ||| ||| || ||| ||||  |||||||||    ||| ||||| | |||||||||||    
T  42012872 tcacatgttgaataaat-agatgaaaaagtttgatgttcttgtgataaaagtggtaactgattctaagaaaaaaccatattgatgaacttacatttttcc 42012774  T
Q  98 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 183  Q
    ||||| |||||||| ||||||| | || ||||||  || ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  42012773 ttgattaattgggg-taatttatccctcatgacatatatgattcgattttggaacgaaaa-agatgtaaatcacatcttaaatgaa 42012690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 31171316 - 31171480
Alignment:
Q  21 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaactatc--gatga-gcatacatttttccttgatgaattgggggtaatt 117  Q
    ||||||||| |||||||| |||||||||||||| |||||| | ||||||||||| |    ||||| |  |||||| |  |||||||||||||||||||||    
T  31171316 atgaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaaccaaaatgatgaagtctacattatcacttgatgaattgggggtaatt 31171415  T
Q  118 tacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 183  Q
    ||||| |||| ||||||| ||||||||| || |||| ||||||||| ||||||||| || ||||||    
T  31171416 tacctataataacaagtaggattcgattatgaaacg-aaagagatggaaatcacattttgaatgaa 31171480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 32138891 - 32138961
Alignment:
Q  3 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||||||||  |||||||||||||| |||||||||||||||||||||||| ||||||||  |||||||||    
T  32138891 acatgttgaacgaaggagatgaagaattttgatgttcttaagatgaaaatggtaattgattttaagaaaaa 32138961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 31152738 - 31152919
Alignment:
Q  5 atgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaact---atcgatga-gcatacatttttccttg 100  Q
    ||||||||| || || ||||||||| |||||||| |||||||||||||| |||||| | ||| ||||||     |  ||||| |  |||||| |  ||||    
T  31152738 atgttgaatgaaagaaatgaagaagattgatgtttttaagatgaaaatggtaattggttgtatgaaaaaaccaaaatgatgaagtctacattatcacttg 31152837  T
Q  101 atgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 183  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||| || |||| ||||||||| | ||||||| || ||||||    
T  31152838 atgaattgggggtaatttacctataataacaagtaggattcgattatgaaacg-aaagagatggagatcacattttgaatgaa 31152919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 32962398 - 32962455
Alignment:
Q  5 atgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 62  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||    
T  32962398 atgttgaataaaggagatgaaaaagtttgattttcttaaaatgaatatgataattgat 32962455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23944148 - 23944096
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 53  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||    
T  23944148 tcacatgttgaatgaaagagaagaagaagtttgatgttcttaagatgaaaatg 23944096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34891437 - 34891380
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataat 58  Q
    ||||||||| ||| ||| |||| |||||||||||||||||||| ||||||||||||||    
T  34891437 tcacatgttaaatgaagaagataaagaagtttgatgttcttaatatgaaaatgataat 34891380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 22593597 - 22593722
Alignment:
Q  26 gaagtttgatgttcttaagatgaaaatgataattgatagt-aagaaaaa-----ctatcgatgag-catacatttttccttgatgaattgggggtaattt 118  Q
    |||||||||||||||| |||||||||||| ||||||| || ||||||||      |||||||||| | ||||||   | || ||||||||| ||||||||    
T  22593597 gaagtttgatgttcttgagatgaaaatgacaattgattgtaaagaaaaaaaatcttatcgatgagacctacattacccattaatgaattggaggtaattt 22593696  T
Q  119 acctctaatgacaagtacgattcgatt 145  Q
    ||| |||||||||| ||||||||||||    
T  22593697 acc-ctaatgacaattacgattcgatt 22593722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 8900670 - 8900831
Alignment:
Q  18 gagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaactatcgatg----agcatacatttttccttgatgaattgggggt 113  Q
    |||||||||||||||| ||||||| |||| |||||| ||||| || ||||||||||  |   |||    ||| |||||| | | |||||||||| |||||    
T  8900670 gagatgaagaagtttgttgttcttgagataaaaatggtaatttattgtaagaaaaaacaaaaatgttgaagcctacattatccattgatgaatt-ggggt 8900768  T
Q  114 aatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgtt 176  Q
    |||||| | ||||| |||||||  |||||||| || ||| |||| | ||||| ||||||||||    
T  8900769 aatttatccctaataacaagtagaattcgattatgaaacaaaaaaaaatgtagatcacatgtt 8900831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 33362347 - 33362436
Alignment:
Q  98 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 189  Q
    ||||||| || ||||||| |||| |||||||  || || ||||||||||| |||| ||||||| ||||||||||||||| ||||||| ||||    
T  33362347 ttgatgagttaggggtaagttac-tctaatggtaaatatgattcgattttagaac-aaaagagttgtaaatcacatgttgaatgaaggagat 33362436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 7463902 - 7463864
Alignment:
Q  19 agatgaagaagtttgatgttcttaagatgaaaatgataa 57  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  7463902 agatgaagaagtttgatgttcttcaaatgaaaatgataa 7463864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33362415 - 33362465
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaa 51  Q
    ||||||||||||| |||||||| || |||||||||||||| || |||||||    
T  33362415 tcacatgttgaatgaaggagattaaaaagtttgatgttctgaaaatgaaaa 33362465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8354395 - 8354444
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaa 50  Q
    ||||||||||||| ||||| ||| |||||||| |||||||| ||||||||    
T  8354395 tcacatgttgaatgaaggatatgtagaagtttaatgttcttgagatgaaa 8354444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 27651379 - 27651415
Alignment:
Q  37 ttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  27651379 ttcttgagatgaaaatgataattgattgtaagaaaaa 27651415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27651513 - 27651564
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 53  Q
    ||||||||||||| |||||||||| |  ||||||||||||| |||||||||||    
T  27651513 tcacatgttgaatgaaggagatga-gttgtttgatgttcttgagatgaaaatg 27651564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 29152350 - 29152402
Alignment:
Q  21 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    |||||||||||||||||| || ||||||||||  ||| |||| ||||||||||    
T  29152350 atgaagaagtttgatgttattgagatgaaaatagtaactgattgtaagaaaaa 29152402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 7113617 - 7113804
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa--ctat--cgatgagcatacatttttc 96  Q
    ||||| ||||||| || ||||||||||||||| || ||||| |||||||||||||||||||| |||| |||||  ||||  ||| || | ||||||||||    
T  7113617 tcacacgttgaatgaatgagatgaagaagtttaatattcttgagatgaaaatgataattgatggtaaaaaaaatactataccgacgaacctacatttttc 7113716  T
Q  97 cttgatgaattg-ggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaag 184  Q
    |||||||||||| ||||||||||||| || ||| ||| |||||||| ||| |||||| |||||||||||||||||||| ||||||||||    
T  7113717 cttgatgaattgaggggtaatttaccgctgatgtcaaatacgattcaattatggaac-aaaagagatgtaaatcacatcttaaatgaag 7113804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 40483922 - 40483739
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa--ctatcgatgag-catacatttttcc 97  Q
    ||||||||||| ||||| ||||||||||||| ||||||||| | || ||  ||  ||||||| ||| ||||||  ||||||||||| | ||  || |  |    
T  40483922 tcacatgttgagtaaagaagatgaagaagttggatgttcttgatataaatttgggaattgattgtacgaaaaaacctatcgatgaggcctatgttatctc 40483823  T
Q  98 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatga 182  Q
    ||||||||||| |||||| ||||| | ||||| ||||| ||||||||||||||||| || |||||| | |||||||||| |||||    
T  40483822 ttgatgaattgagggtaaattacccccaatgataagtatgattcgattttggaacg-aatgagatgaagatcacatgttgaatga 40483739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 2243319 - 2243388
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 70  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||| | || |||||||    
T  2243319 tcacatgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaactaattgtaagaa 2243388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 973183 - 973111
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    |||||||||||||||||||||||||||| ||| ||||| || |||| |||||||||| | || ||||||||||    
T  973183 tcacatgttgaataaaggagatgaagaaatttaatgtttttgagataaaaatgataactaattgtaagaaaaa 973111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 2243249 - 2243335
Alignment:
Q  96 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaag 184  Q
    |||||||||||||||| |||||||||||||||||||||||  |||||||| | ||||||| | ||||| | |||||||||| |||||||    
T  2243249 ccttgatgaattgggg-taatttacctctaatgacaagtaaaattcgattctagaacgaaga-agatggagatcacatgttgaatgaag 2243335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 14138615 - 14138548
Alignment:
Q  3 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 70  Q
    ||||||||||| || |||||||  ||||||||| ||||||||||||||||| |||||||| |||||||    
T  14138615 acatgttgaatgaaagagatgagaaagtttgatattcttaagatgaaaatggtaattgattgtaagaa 14138548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 17740009 - 17739908
Alignment:
Q  96 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaa 194  Q
    ||||||||||||| | | |||| | | ||||| | ||||| ||||||||| |||||||||  |||||| ||||||||||||||||||||||||| |||||    
T  17740009 ccttgatgaattgagtgaaattcatccctaataataagtaggattcgattctggaacgaag-gagatgaaaatcacatgttaaatgaagaagatgaagaa 17739911  T
Q  195 gtt 197  Q
    |||    
T  17739910 gtt 17739908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 972883 - 972845
Alignment:
Q  19 agatgaagaagtttgatgttcttaagatgaaaatgataa 57  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  972883 agatgaagaagtttgatgttcttgagatgaaaatgataa 972845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 7215322 - 7215371
Alignment:
Q  24 aagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    |||||||||||||||||| ||||||||||| || ||||| ||||||||||    
T  7215322 aagaagtttgatgttcttgagatgaaaatggtagttgattgtaagaaaaa 7215371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 7215230 - 7215329
Alignment:
Q  97 cttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataagaagt 196  Q
    |||| |||||| |||||||||||||  |||||| || || ||||| ||||| ||| ||||| ||||| | ||||||| || ||||||||||| |||||||    
T  7215230 cttgttgaattcggggtaatttaccgttaatgataaatatgattcaattttagaatgaaaa-agatggagatcacatattcaatgaagaagaaaagaagt 7215328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17736757 - 17736829
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||||||||| | ||| |||||||||||||| || || || ||||||||||| |||||| | ||||||||||    
T  17736757 tcacatgttgagtgaagaagatgaagaagtttaatattattgagatgaaaatggtaattggttgtaagaaaaa 17736829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 37077707 - 37077663
Alignment:
Q  18 gagatgaagaagtttgatgttcttaagatgaaaatgataattgat 62  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||    
T  37077707 gagatgaagaagtttaatgttcttgagatgaaaatgataactgat 37077663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 39730369 - 39730484
Alignment:
Q  87 tacatttttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaa 186  Q
    |||||||||| |  ||||||||  ||||||||||| || ||||||  ||| |||||||||||||||| || |||||||| || |||| ||  |||||| |    
T  39730369 tacatttttcttgaatgaattgatggtaatttacccctcatgacatatacaattcgattttggaacg-aacgagatgtatattacatcttcgatgaagga 39730467  T
Q  187 gat-aagaagttcgaag 202  Q
    ||| |||||||||||||    
T  39730468 gataaagaagttcgaag 39730484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 39808239 - 39808291
Alignment:
Q  5 atgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataa 57  Q
    ||||| ||| ||||||||||| |||||||||| ||||||| ||||||||||||    
T  39808239 atgttaaatgaaggagatgaaaaagtttgatggtcttaaggtgaaaatgataa 39808291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 39730312 - 39730361
Alignment:
Q  4 catgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 53  Q
    |||||| ||| || |||||||| ||||||||||||||| |||||||||||    
T  39730312 catgttaaatgaaagagatgaaaaagtttgatgttcttgagatgaaaatg 39730361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 22780347 - 22780399
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 53  Q
    ||||||||||||| ||||| ||||||||||||  |||| || |||||||||||    
T  22780347 tcacatgttgaatgaaggatatgaagaagtttattgtttttgagatgaaaatg 22780399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37077832 - 37077760
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||||||||||| ||  | || ||||| ||||||||| || ||||||||||| ||| |||| ||||||||||    
T  37077832 tcacatgttgaatgaaaaaaattaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 37077760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 191
Target Start/End: Original strand, 13712757 - 13712945
Alignment:
Q  5 atgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac--tatcgatgagcatacatttttcc-ttga 101  Q
    ||||||||||||| |||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||  ||||    ||| |||| |||||| ||||    
T  13712757 atgttgaataaagaagataaagaagtttgatgttcttaagatggaaatggtaactgatagtaagaaaaaccttatcagcaagcctacaattttcctttga 13712856  T
Q  102 tgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 191  Q
    || |||| |||||||||| | |||||||||| ||| ||| | |||||||||  ||||||||||| |||||||||||||||||| ||||||    
T  13712857 tgtattgagggtaatttatccctaatgacaaatacaattaggttttggaac-caaagagatgtagatcacatgttaaatgaaggagataa 13712945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 9050132 - 9050313
Alignment:
Q  5 atgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaact---atcgatgag-catacatttttccttg 100  Q
    ||||||||| | ||||||||||||||||| ||||||| | ||||||||| ||| |||| |||||||||| |   || || ||| |  ||||| |  ||||    
T  9050132 atgttgaatgatggagatgaagaagtttgttgttcttcatatgaaaatggtaactgatcgtaagaaaaaattatattgacgagaccaacattatctcttg 9050231  T
Q  101 atgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 183  Q
    |||||||| ||||||||||||||||||||| |||| ||||||||| || ||| |||  |||||||||||| ||||||||||||    
T  9050232 atgaattgagggtaatttacctctaatgactagtaggattcgattatgaaac-aaagaagatgtaaatcaaatgttaaatgaa 9050313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 16576320 - 16576248
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||    
T  16576320 tcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaa 16576248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 16863528 - 16863459
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 70  Q
    |||||| |||||||||| |||||||||| |||||||||||| ||||||||||| ||| |||| |||||||    
T  16863528 tcacatattgaataaagaagatgaagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaa 16863459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 38576791 - 38576955
Alignment:
Q  21 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac---tatcgatgag-catacatttttccttgatgaattgggggtaat 116  Q
    |||||||||||||||  | || ||||||||||| ||| |||| ||||||||||    |||||||||| | ||||||   |||| ||||||||||| ||||    
T  38576791 atgaagaagtttgattatattgagatgaaaatggtaactgattgtaagaaaaaaccttatcgatgaggcctacattacccctttatgaattgggg-taat 38576889  T
Q  117 ttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 183  Q
    ||||  |||||||||| || |||| |||| ||| |||||| |||||| |||||||||||| ||||||    
T  38576890 ttactcctaatgacaaatatgatttgattatggtacgaaa-gagatggaaatcacatgttgaatgaa 38576955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 38576707 - 38576764
Alignment:
Q  94 ttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaa 151  Q
    ||||||||||||| |  ||||||||||||| ||||||||||| |||||||||||||||    
T  38576707 ttccttgatgaatcgaaggtaatttacctcaaatgacaagtatgattcgattttggaa 38576764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 2909892 - 2909844
Alignment:
Q  3 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaa 51  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||||    
T  2909892 acatgttgaatgaaggagatgaagaagtttgatgtttttaaaatgaaaa 2909844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 16576486 - 16576290
Alignment:
Q  4 catgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctat-cgatgagcatacatttttcctt 99  Q
    |||||| ||| ||||| ||||||| ||||| |||| || | ||||||||||||| |||| ||||||||||   |||| ||  | || ||| ||   ||||    
T  16576486 catgttaaatgaaggatatgaagatgtttgttgtttttgaaatgaaaatgataaatgattgtaagaaaaaactctatccgtggggcctacgttacccctt 16576387  T
Q  100 gatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaagtt 197  Q
    |||||||| ||| ||||||||| ||||||| ||||| ||||||||| ||||||| || |||| | | |||||||||| ||||||| |||| ||||||||    
T  16576386 gatgaatt-gggttaatttacccctaatgataagtatgattcgattctggaacg-aatgagaaggagatcacatgttgaatgaaggagatgaagaagtt 16576290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 9931406 - 9931337
Alignment:
Q  113 taatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 183  Q
    ||||||||| |  ||||||| ||||||||||||||||||| |||||||||| | ||||||||| |||||||    
T  9931406 taatttaccccacatgacaaatacgattcgattttggaac-aaaagagatgaatatcacatgtaaaatgaa 9931337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38576940 - 38577001
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 62  Q
    ||||||||||||| || ||||||||||| ||| |||||||| ||||||||||| ||| ||||    
T  38576940 tcacatgttgaatgaaagagatgaagaactttaatgttctttagatgaaaatggtaactgat 38577001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 25606506 - 25606423
Alignment:
Q  99 tgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 183  Q
    |||||||||| ||||||||||||  |||| ||||||| |||||| || ||||||| || |||||||| |||| ||||| ||||||    
T  25606506 tgatgaattgagggtaatttacccttaataacaagtaggattcgtttatggaacg-aaggagatgtatatcatatgttgaatgaa 25606423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 34176697 - 34176654
Alignment:
Q  19 agatgaagaagtttgatgttcttaagatgaaaatgataattgat 62  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||    
T  34176697 agatgaagaagtttgatattcttaagatgaaaatggtaactgat 34176654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 35370468 - 35370402
Alignment:
Q  3 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaaga 69  Q
    ||||||||||| ||||||| ||||||||||| | ||||| |||| |||||| ||| |||| ||||||    
T  35370468 acatgttgaatgaaggagacgaagaagtttggtattcttgagattaaaatggtaactgattgtaaga 35370402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 28282791 - 28282699
Alignment:
Q  98 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 191  Q
    |||||||||||  ||||||||||| ||||| |||||||  ||| |||| ||||||| || |||||| | ||||||| || ||||||| ||||||    
T  28282791 ttgatgaattgacggtaatttacccctaataacaagtaaaatttgattatggaacg-aatgagatggagatcacatattgaatgaagcagataa 28282699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 25606434 - 25606366
Alignment:
Q  5 atgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||||||| ||  |||||||||| |||||||||||  || ||||||||||| ||||  ||||||||||    
T  25606434 atgttgaatgaaacagatgaagaattttgatgttctggagttgaaaatgatatttgagtgtaagaaaaa 25606366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 28282876 - 28282824
Alignment:
Q  21 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||| ||||||||| || |  |||||||||||||||||||| ||||||||||    
T  28282876 atgaaaaagtttgatattatggagatgaaaatgataattgattgtaagaaaaa 28282824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 25234217 - 25234393
Alignment:
Q  15 aaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac-tatcgatgagcatacatttttccttgatgaattgggggt 113  Q
    ||||| || ||||| |||||||||||| ||||||||||| ||| ||||  |||||||| | |||| |||||| |||||||||||||||||||||  ||||    
T  25234217 aaggatattaagaaatttgatgttcttgagatgaaaatggtaactgatgctaagaaaaccatatcaatgagcctacatttttccttgatgaattacgggt 25234316  T
Q  114 aatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 191  Q
    |||||||| || ||||||| ||||||||||||||||||||  ||||| | |||||||||  |||||||||| ||||||    
T  25234317 aatttaccgctcatgacaaatacgattcgattttggaacg-taagaggtataaatcacaccttaaatgaaggagataa 25234393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 25062544 - 25062361
Alignment:
Q  19 agatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaact----atcgatga-gcatacatttttccttgatgaattgggggt 113  Q
    ||||||||||||||||| ||||| ||||||||| | |||||||| ||||||||||      || | ||| || |||||| ||||||||||||||| ||||    
T  25062544 agatgaagaagtttgatattcttgagatgaaaacggtaattgattgtaagaaaaaaaccaaattggtgaagcctacattattccttgatgaattgagggt 25062445  T
Q  114 aatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaagtt 197  Q
    |||||||| ||||| ||||||| |||| |||| |||||| ||| |||||| | |||||||||| ||||||| |||| ||||||||    
T  25062444 aatttacccctaataacaagtaggatttgattatggaac-aaaggagatgaagatcacatgtttaatgaagcagatgaagaagtt 25062361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 15131578 - 15131698
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcatacatttttcc 97  Q
    ||||||| ||||| |||||||||||||| |||||||||||| |||| |||||| ||| |||||||||||||||    ||||||||||| ||||||  | |    
T  15131578 tcacatgctgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaactgatagtaagaaaaaaccatatcgatgagcctacattaattc 15131677  T
Q  98 ttgatgaattgggggtaattt 118  Q
    ||||||||||  |||||||||    
T  15131678 ttgatgaattaagggtaattt 15131698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 54000050 - 54000199
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcatacatttttcc 97  Q
    |||||||||||||||| | ||||||    |||||||||||| ||||||||||| |||||||||||||||||||    |||||||||   |||||||||      
T  54000050 tcacatgttgaataaatgtgatgaatttttttgatgttcttgagatgaaaatggtaattgatagtaagaaaaaaccatatcgatgaatctacattttttt 54000149  T
Q  98 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgatttt 147  Q
    || ||||| || | |||||||||   | ||||||| ||||||||||||||    
T  54000150 tttatgaactgagtgtaatttactcgtcatgacaaatacgattcgatttt 54000199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 4115389 - 4115452
Alignment:
Q  4 catgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaa 67  Q
    |||||||||| || |||||| |||||||| ||||||||||||| |||||| ||||| |||||||    
T  4115389 catgttgaatgaatgagatggagaagtttcatgttcttaagataaaaatggtaattaatagtaa 4115452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 20512832 - 20512891
Alignment:
Q  3 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 62  Q
    ||||||| ||| ||| ||||||||||||||||||||  |||||||||||||| |||||||    
T  20512832 acatgttaaatgaagaagatgaagaagtttgatgtttataagatgaaaatgacaattgat 20512891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22050924 - 22050851
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac 74  Q
    ||||||||||||| ||||||||||||||  ||  |||| ||||||| |||||||||| | || |||||||||||    
T  22050924 tcacatgttgaatgaaggagatgaagaaacttattgtttttaagataaaaatgataactaattgtaagaaaaac 22050851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 55897693 - 55897600
Alignment:
Q  98 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 191  Q
    ||||||||||| || || ||||||  |||| |||||||  |||  ||||||||||||||||||||| | |||| ||||| |||||| |||||||    
T  55897693 ttgatgaattgaggatagtttacccttaataacaagtagaatttaattttggaacgaaaagagatgaagatcatatgttgaatgaataagataa 55897600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 54000219 - 54000275
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataa 57  Q
    |||||| || ||| |||||||| ||||||||||||||| ||||||| ||||||||||    
T  54000219 tcacatcttaaatgaaggagataaagaagtttgatgtttttaagataaaaatgataa 54000275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25062391 - 25062340
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaat 52  Q
    ||||||||| ||| ||| |||||||||||||||||||||| ||||| |||||    
T  25062391 tcacatgtttaatgaagcagatgaagaagtttgatgttctgaagataaaaat 25062340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11020084 - 11020144
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 62  Q
    ||||||||| |||||||||||| || | ||||||| || |||||||||||||||||| ||||    
T  11020084 tcacatgttaaataaaggagataaa-aggtttgatatttttaagatgaaaatgataactgat 11020144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 22050995 - 22050903
Alignment:
Q  96 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 189  Q
    |||| |||||||||||||||||||||  |||||| || || ||||||||| | ||| | || |||||| | |||||||||| ||||||| ||||    
T  22050995 cctttatgaattgggggtaatttacccttaatgataaatatgattcgattct-gaaaggaatgagatgaagatcacatgttgaatgaaggagat 22050903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 39341268 - 39341110
Alignment:
Q  4 catgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcatacatttttccttg 100  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||||| ||| | |||||||||||||    ||||| |||||||| |||||||||||    
T  39341268 catgttgaatgaaggagatgaaaaagtttgatattcttaagatgaaaatggtaactcatagtaagaaaaaattatatcggtgagcatatatttttccttg 39341169  T
Q  101 atgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaaga 159  Q
    || ||||| || ||||||||| || | || || || ||||||| ||| ||||| |||||    
T  39341168 attaattgaggataatttacccctcacgataaatatgattcgactttagaacgtaaaga 39341110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 42091794 - 42091951
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaa-gaaaaactatcgatgag-catacatttttcct 98  Q
    ||||||||| ||| || |||||||| |||||||||||| || ||||||||||||||||| || |||| ||||||  || | |||| |||||| |   |||    
T  42091794 tcacatgttaaatgaaagagatgaaaaagtttgatgtttttgagatgaaaatgataattaattgtaaggaaaaagcattggtgagacatacaatacccct 42091893  T
Q  99 tgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaa 156  Q
    ||| ||||||||||||||||||| ||||| ||||||| || | |||| ||||||||||    
T  42091894 tgacgaattgggggtaatttacccctaatcacaagtaagacttgattatggaacgaaa 42091951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 46303442 - 46303371
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaa 72  Q
    ||||||||||||||||| |||||||||||||||||| |||  |||| ||||||||| ||||| |||||||||    
T  46303442 tcacatgttgaataaagaagatgaagaagtttgatgctctatagataaaaatgatatttgattgtaagaaaa 46303371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 54437949 - 54437848
Alignment:
Q  96 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaa 194  Q
    ||||| |||||| ||||||||||||||||||||| || || |||| ||||||  || ||||| ||||| ||| ||| |||||||||| |||||| |||||    
T  54437949 ccttgttgaattaggggtaatttacctctaatgataaatatgatttgattttaaaatgaaaa-agatggaaaccacgtgttaaatgaggaagatgaagaa 54437851  T
Q  195 gtt 197  Q
    |||    
T  54437850 gtt 54437848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 31758298 - 31758242
Alignment:
Q  17 ggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac 74  Q
    |||||| |||||||||||| || |||||||||||||| |||||||| |||||||||||    
T  31758298 ggagattaagaagtttgatatt-ttaagatgaaaatggtaattgattgtaagaaaaac 31758242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 39341340 - 39341283
Alignment:
Q  98 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaa 155  Q
    |||||||||| ||||||||||||||||||||| || || ||||| ||||| |||||||    
T  39341340 ttgatgaattaggggtaatttacctctaatgataaataagattcaattttagaacgaa 39341283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 34761956 - 34762028
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||||||||| | |||||||| || | ||||||| ||||  |||||||||||||||||||| | ||||||||    
T  34761956 tcacatgttgagtgaaggagataaaaaggtttgatattctcgagatgaaaatgataattgattgaaagaaaaa 34762028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 54437860 - 54437806
Alignment:
Q  19 agatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    |||||||||||||||||||| || |||| |||||| ||| |||| ||||||||||    
T  54437860 agatgaagaagtttgatgtttttgagattaaaatggtaactgattgtaagaaaaa 54437806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 48646479 - 48646423
Alignment:
Q  5 atgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 62  Q
    ||||||||| ||| | ||||| ||||||||||||||||||||||||||| | ||||||    
T  48646479 atgttgaatgaagaatatgaa-aagtttgatgttcttaagatgaaaatggtcattgat 48646423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 20519299 - 20519351
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 53  Q
    ||||||||| ||| || ||||||||||| ||||| |||||| |||||||||||    
T  20519299 tcacatgtttaatgaaagagatgaagaaatttgacgttcttgagatgaaaatg 20519351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 54437707 - 54437651
Alignment:
Q  3 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataatt 59  Q
    ||||||| ||| ||||| |||||||||||| ||||| || ||||||||||| |||||    
T  54437707 acatgttaaatgaaggatatgaagaagtttaatgttattgagatgaaaatggtaatt 54437651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 20068155 - 20068000
Alignment:
Q  3 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgag-catacatttttcct 98  Q
    ||||||||||| || ||||||| |||||||||||||||  | ||||||||| || | ||| ||||||||||   |||| |||||| | |||||||| | |    
T  20068155 acatgttgaatgaaagagatgaggaagtttgatgttctctacatgaaaatggtact-gattgtaagaaaaagcactatggatgaggcttacattttcctt 20068057  T
Q  99 tgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaa 155  Q
    ||||||||||  |||||||||||  ||| |||||||| ||||||||| |||||||||    
T  20068056 tgatgaattgaaggtaatttacccttaaagacaagtaggattcgattatggaacgaa 20068000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 32342669 - 32342600
Alignment:
Q  4 catgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    |||||||||| || |||||||| |||||||||||| || |||||||||||||||||||| ||||||||||    
T  32342669 catgttgaatgaatgagatgaaaaagtttgatgtttttgagatgaaaatgataattgattgtaagaaaaa 32342600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 23577219 - 23577118
Alignment:
Q  5 atgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac--tatcgatgagcatacatttttccttgat 102  Q
    ||||||||| ||||||||| |||||| ||||||| || ||||||||||| ||| || || ||||||||||  ||||  ||||| ||||||||||||| ||    
T  23577219 atgttgaatgaaggagatggagaagtatgatgtttttgagatgaaaatggtaactgttactaagaaaaaccatatcattgagcctacatttttccttcat 23577120  T
Q  103 ga 104  Q
    ||    
T  23577119 ga 23577118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 32047242 - 32047194
Alignment:
Q  5 atgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 53  Q
    ||||||||| || |||||||||||||||||||||||| |||||||||||    
T  32047242 atgttgaatgaatgagatgaagaagtttgatgttcttgagatgaaaatg 32047194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 20206481 - 20206527
Alignment:
Q  24 aagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 70  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||    
T  20206481 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 20206527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 22100504 - 22100550
Alignment:
Q  24 aagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 70  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||    
T  22100504 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 22100550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 32047317 - 32047262
Alignment:
Q  96 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaa 151  Q
    ||||||||||||| || ||||||||||||||||| ||||| ||||| ||| |||||    
T  32047317 ccttgatgaattgaggataatttacctctaatgataagtaggattcaattatggaa 32047262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 23577121 - 23577068
Alignment:
Q  126 atgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaat 180  Q
    ||||||| ||||||||||||||||||  ||||||||||||||| |||| ||||||    
T  23577121 atgacaaatacgattcgattttggaa-taaaagagatgtaaataacatcttaaat 23577068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 26236751 - 26236797
Alignment:
Q  99 tgatgaattgggggtaatttacctctaatgacaagtacgattcgatt 145  Q
    |||| |||||||||||||||||||||||| | ||||| |||||||||    
T  26236751 tgataaattgggggtaatttacctctaataataagtatgattcgatt 26236797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 23577070 - 23577009
Alignment:
Q  11 aataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaa 72  Q
    |||||| ||||| ||||| ||| ||||| |||| |||||||||||||||||| |||| ||||    
T  23577070 aataaaagagataaagaaattttatgtttttaaaatgaaaatgataattgattgtaaaaaaa 23577009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 46081041 - 46080971
Alignment:
Q  3 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||||||| | |||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  46081041 acatgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaaaaa 46080971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 10775231 - 10775163
Alignment:
Q  5 atgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||||||  || |||||||||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  10775231 atgttgaacgaaagagatgaagaagtttgatgttcttaagatgaaaatggtaattgattctaagaaaaa 10775163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 34601444 - 34601516
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||| |  |||||||| ||| ||||||    
T  34601444 tcacatgttgaataaaggagatgaggaagtttgatgttcttaagataaaagttgtaattgattgtaggaaaaa 34601516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 7997194 - 7997314
Alignment:
Q  3 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcatacatttttcctt 99  Q
    ||||||||||| || || ||||||||||| ||| || |  ||||||||||| ||||||||| |||||||||    |||||||||   ||||||||| |||    
T  7997194 acatgttgaatgaaagaaatgaagaagttagatattatagagatgaaaatggtaattgatactaagaaaaaatcatatcgatgaatctacattttttctt 7997293  T
Q  100 gatgaattgggggtaatttac 120  Q
    |||||||| ||||||||||||    
T  7997294 gatgaatttggggtaatttac 7997314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 44342055 - 44342145
Alignment:
Q  21 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac---tatcgatgagcatacatttttccttgatgaattggg 110  Q
    |||||||||||||||||| || | ||||||||| |||| ||||||||||||||    ||||| ||||| ||||||||||||||||||||||||    
T  44342055 atgaagaagtttgatgtt-ttgatatgaaaatggtaat-gatagtaagaaaaaactatatcggtgagcctacatttttccttgatgaattggg 44342145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 3232271 - 3232179
Alignment:
Q  96 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 189  Q
    |||||||||||| |||| |||||||||||||||| ||||| ||||||||  | ||| | ||||||||| | || ||||||| ||||||||||||    
T  3232271 ccttgatgaattaggggcaatttacctctaatgataagtatgattcgatactagaa-gtaaagagatggagattacatgttgaatgaagaagat 3232179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 7104400 - 7104316
Alignment:
Q  104 aattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 189  Q
    |||||||||||| |||| |||||||||||||| ||||||||| || |||| ||||||||| | || ||||||| ||||||| ||||    
T  7104400 aattgggggtaaattacttctaatgacaagtatgattcgattctgaaacg-aaagagatgaatattacatgttgaatgaaggagat 7104316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24873838 - 24873765
Alignment:
Q  1 tcacatgttgaataaaggagatg-aagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||||||||||| | ||||||| || ||||||||| ||||||| ||||||||| |||||||| ||||||||||    
T  24873838 tcacatgttgaattatggagatgaaaaaagtttgatcttcttaaaatgaaaatggtaattgattgtaagaaaaa 24873765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24874671 - 24874598
Alignment:
Q  1 tcacatgttgaataaaggagatg-aagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||||||||||| | ||||||| || ||||||||| ||||||| ||||||||| |||||||| ||||||||||    
T  24874671 tcacatgttgaattatggagatgaaaaaagtttgatcttcttaaaatgaaaatggtaattgattgtaagaaaaa 24874598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 42819674 - 42819621
Alignment:
Q  20 gatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    |||||| |||||| |||||||| |||||||||||||||||||| ||||||||||    
T  42819674 gatgaataagttttatgttcttgagatgaaaatgataattgattgtaagaaaaa 42819621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 52432733 - 52432672
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 62  Q
    |||| |||| ||| |||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  52432733 tcacttgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgat 52432672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12145039 - 12144970
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||||||||||| || |||||||||||||||||   | || |||| ||||||||||||||| ||||||||||    
T  12145039 tcacatgttgaatgaatgagatgaagaagtttga---tattgagataaaaatgataattgattgtaagaaaaa 12144970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 49897998 - 49897909
Alignment:
Q  111 ggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaag-ataagaagttcga 200  Q
    |||||||||||||||||||||| || ||||||||| | |||| ||| |||||| | |||||||||| ||||||| || | |||||||||||    
T  49897998 ggtaatttacctctaatgacaattatgattcgattctagaac-aaaggagatggagatcacatgttgaatgaaggagaagaagaagttcga 49897909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 68054 - 67982
Alignment:
Q  111 ggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaag 184  Q
    |||||||||||||||||||||| || ||| ||||||||||| | ||||||||| | |||||||||  |||||||    
T  68054 ggtaatttacctctaatgacaattatgatccgattttggaatg-aaagagatgaagatcacatgtagaatgaag 67982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 68169 - 68097
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||||||| ||| ||||||||||||||||| ||||||||| | || |||||| ||| | || ||||||||||    
T  68169 tcacatgttaaatgaaggagatgaagaagttagatgttcttgaaataaaaatggtaactcattgtaagaaaaa 68097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 68198 - 68139
Alignment:
Q  138 attcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaagtt 197  Q
    |||||||||||||||||||| ||||| | |||||||||||||||||| |||| ||||||||    
T  68198 attcgattttggaacgaaaa-agatggagatcacatgttaaatgaaggagatgaagaagtt 68139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 49897942 - 49897870
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 73  Q
    ||||||||||||| ||||||| ||||||||| || |||||| || | |||||| ||||| || ||||||||||    
T  49897942 tcacatgttgaatgaaggagaagaagaagttcgacgttcttgagctaaaaatggtaattaatcgtaagaaaaa 49897870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3232030 - 3231979
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaat 52  Q
    ||||||||||||| || || ||||||||||||| ||||||| ||||||||||    
T  3232030 tcacatgttgaatgaatgacatgaagaagtttgttgttcttgagatgaaaat 3231979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38839664 - 38839715
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaat 52  Q
    |||||||| |||| ||| ||||||||| ||||||||||||| ||||||||||    
T  38839664 tcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaat 38839715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10775089 - 10775028
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 62  Q
    ||||||||||||| ||  ||| |||||| |||||||||||  |||||||||||||| |||||    
T  10775089 tcacatgttgaatgaaacagacgaagaaatttgatgttctggagatgaaaatgatatttgat 10775028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3367854 - 3367806
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaa 49  Q
    ||||||||||||| || |||||||| || |||||||||||| |||||||    
T  3367854 tcacatgttgaatgaatgagatgaaaaaatttgatgttcttgagatgaa 3367806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36976 - 37033
Alignment:
Q  1 tcacatgttgaataaaggagatgaagaagtttgatgt-tcttaagatgaaaatgataa 57  Q
    |||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||    
T  36976 tcacatgttgaataaacgagatgaagaaatttgatgtgttttaagatgaaaatgataa 37033  T

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Target: scaffold1743 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 853 - 794
Alignment:
Q  3 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 62  Q
    ||||||||||| ||||||||||||||||||||| | ||| | | ||||||||||| ||||    
T  853 acatgttgaatcaaggagatgaagaagtttgatatacttgaaaggaaaatgataaatgat 794  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 62744 - 62791
Alignment:
Q  15 aaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 62  Q
    |||||||| ||||||||||||||| ||||||||||| |||||| ||||    
T  62744 aaggagataaagaagtttgatgtttttaagatgaaattgataactgat 62791  T

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