View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_199 (Length: 276)
Name: NF6867A_low_199
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_199 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 40586119 - 40586365
Alignment:
| Q |
19 |
atcaagcacagagaaaaagaaaggttaagataccatttgttggaggtgttgtatatgga------gctggagcaggagctggaggtggagttggataagg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40586119 |
atcaagcacagagaaaaagaaaggttaagataccatttgttggaggtgttgtatatggagctggagctggagcaggagctggaggtggagttggataagg |
40586218 |
T |
|
| Q |
113 |
agcaagtggaactggcattataaaataactaagtcaaaagtattatttttctgtgccaaattctacaaacagaacaaagcacttccattcattttttcaa |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40586219 |
agcaagtggaactggcattataaaagaactaagtcaaaagtattatttttctgtgccaaattctacaaacagaacaaagcacttccatccattttttcaa |
40586318 |
T |
|
| Q |
213 |
ctcctggaaaaggaagaaatatagtaaaagattcattcaagagggag |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40586319 |
ctcctggaaaaggaagaaatatagtaaaagattcattcaagagggag |
40586365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University