View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_2 (Length: 666)
Name: NF6867A_low_2
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 10 - 644
Target Start/End: Original strand, 43875360 - 43875994
Alignment:
| Q |
10 |
aagaatatgatgctgcctggtgcctagaagactagcaccattcagaaactaatgctgatgctattccactgtttcatttgttttttgaatgcaatgcatt |
109 |
Q |
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| T |
43875360 |
aagaatatgatgctgcctggtgcctagaagactagcaccattcagaaactaatgctgatgctatttcactgttttatttgttttttgaatgcaatgcatt |
43875459 |
T |
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| Q |
110 |
tactatcatcaatacaacacttattttgaaaccaaaacagtactcagaaaaacataacaaataacaaagacaactagtcaatttgggggaaaacatcatt |
209 |
Q |
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| T |
43875460 |
tactatcatcaatacaacacttattttgaaaccaaaacagtactcagaaaaacataacaaataacaaagacaactagtcaatttgggggaaaacatcatt |
43875559 |
T |
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| Q |
210 |
actctgtctggcttgaaaactcacctaaccagtcttagttttctatttatttctagaatccggcatcttttgcgcgcgactaatctcttgagtcggatag |
309 |
Q |
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| T |
43875560 |
actctgtctggcttgaaaactcacctaaccagtcttagttttctatttatttctagaatccggcatcttttgcgcgcgactaatctcttgagtcggatag |
43875659 |
T |
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| Q |
310 |
gatcgcattgaggggcaaagctcttcctaatccgtcttagtttgttgcacaatatccaacaaaaaatcggtgaaaaaaggctcaaaagatggcaatttag |
409 |
Q |
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| T |
43875660 |
gatcgcattgaggggcaaagctcttcctaatccgtcttagtttgttgcacaacatccaacaaaaaatcggtgaaaaaaggctcaaaagatggcaatttag |
43875759 |
T |
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| Q |
410 |
catacccaggaaagtaattgatatcaatcacaagataccttctgggatttttaccatctctaatcacatcaacattgaaaagattaagtcccaatctttc |
509 |
Q |
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| T |
43875760 |
catacccaggaaagtaattgatatcaatcacaagataccttctgggatttttaccatctctaatcacatcaacattgaaaagattaagtcccaatctttc |
43875859 |
T |
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| Q |
510 |
ccttaatccactagccaactcagcaatcaaactctgaggtggcatttcagccatatcaacagcatcaccatcaacaccttcctcatagttttgagcactc |
609 |
Q |
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| T |
43875860 |
ccttaatccactagccaactcagcaatcaaactctgaggtggcatttcagccatatcaacagcatcaccatcaacaccttcctcatagttttgagcactc |
43875959 |
T |
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| Q |
610 |
aaatttgacacttgagaaaacggcaccgacccttt |
644 |
Q |
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| T |
43875960 |
aaatttgacacttgagaaaacggcaccgacccttt |
43875994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 27736433 - 27736481
Alignment:
| Q |
400 |
ggcaatttagcatacccaggaaagtaattgatatcaatcacaagatacc |
448 |
Q |
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|||| |||||||||||| ||||||||||| |||||||| | |||||||| |
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| T |
27736433 |
ggcattttagcataccctggaaagtaattaatatcaataataagatacc |
27736481 |
T |
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