View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_204 (Length: 273)
Name: NF6867A_low_204
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_204 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 16781501 - 16781229
Alignment:
| Q |
1 |
gaccgaagtagttggcctgggaccaccaggaaccaaaggagcactggaaggccttgacatcatagtcacttgtgcaataggtttttcggttggtcttgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16781501 |
gaccgaagtagttggcctgggaccaccaggaaccaaaggagcactggaaggccttgacatcatagtcacttgtgcaataggtttttcggttggtcttgga |
16781402 |
T |
|
| Q |
101 |
ggtgaagtcttctggatttctgttttaggcacaattgttggttgtgaagcagacgttaaagatgaagatgcatctttacctgtctgttgtgtgacactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16781401 |
ggtgaagtcttctggatttctgttttaggcacaattgttggttgtgaagcagacgttaaagatgaagatgtatctttacctgtctgttgtgtgacactaa |
16781302 |
T |
|
| Q |
201 |
aagatgttttcctgacattaacaggtgagggtaagtttctagaaggactcctcggcgaggatggccctactga |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16781301 |
aagatgttttcctgacattaacaggtgagggtaagtttctagaaggactcctcggcgaggatggccctactga |
16781229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University