View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_208 (Length: 270)
Name: NF6867A_low_208
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_208 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 11565736 - 11565499
Alignment:
| Q |
19 |
gagtgaaatgaacggatagagattagatcgagggtgggaaatggtgcatagacatgaacgacggaaatggcgcagattgtggtgagttatggg-aacaga |
117 |
Q |
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| T |
11565736 |
gagtgaaatgaacggatagatattagatcgagggtgggaaatggtgcatagacatgaacgacggaaatggcgcagattgtggtgagtaatggggaacaga |
11565637 |
T |
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| Q |
118 |
ggattaactgcgttgtggtagttcgggttcgtcgaagaagttgtgtttcacgtgaatggatagataataggtattgataactgattgagtaaagaagaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11565636 |
ggattaactgcgttgtggtagttcgggttcgtcgaagaagttgtgtttcacgtgaatggatagataataggtattgataactgattgagtaaagaagaaa |
11565537 |
T |
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| Q |
218 |
caagtgtttaattccaacaatttgtagtgcacttgcat |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
11565536 |
caagtgtttaattccaacaatttgtagtgcacttgcat |
11565499 |
T |
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